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#!python3
# -*- coding: utf-8 -*-
from setuptools import setup
# Define package info
with open('README.md', 'r') as fh:
long_description = fh.read()
setup(
name = 'pycoQC',
description = 'PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data',
version = '2.5.2',
long_description = long_description,
long_description_content_type='text/markdown',
url = 'https://github.com/a-slide/pycoQC',
author = 'Adrien Leger & Tommaso Leonardi',
author_email = 'aleg@ebi.ac.uk',
license = 'GPLv3',
python_requires ='>=3.6',
classifiers = [
'Development Status :: 3 - Alpha',
'Intended Audience :: Science/Research',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
'Programming Language :: Python :: 3'],
install_requires = [
'numpy>=1.19',
'scipy>=1.5',
'pandas>=1.1',
'plotly==4.1.0',
'jinja2>=2.10',
'h5py>=3.1',
'tqdm>=4.54',
'pysam>=0.16'],
packages = ['pycoQC'],
package_dir = {'pycoQC': 'pycoQC'},
package_data = {'pycoQC': ['templates/*']},
entry_points = {
'console_scripts': [
'pycoQC=pycoQC.__main__:main_pycoQC',
'Fast5_to_seq_summary=pycoQC.__main__:main_Fast5_to_seq_summary',
'Barcode_split=pycoQC.__main__:main_Barcode_split']}
)
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