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version:
major: 2
minor: 5
micro: 2
a: null
b: null
rc: null
post: null
dev: null
managed_values:
__package_name__: pycoQC
__package_description__: PycoQC computes metrics and generates interactive QC plots
for Oxford Nanopore technologies sequencing data
__package_introduction__: PycoQC relies on the *sequencing_summary.txt* file generated
by Albacore and Guppy, but if needed it can also generate a summary file from
basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion,
Gridion and Promethion devices, basecalled with Albacore 1.2.1+ or Guppy 2.1.3+.
PycoQC is written in pure Python3. **Python 2 is not supported**. For a quick
introduction see tutorial by [Tim Kahlke](https://github.com/timkahlke) available
at https://timkahlke.github.io/LongRead_tutorials/QC_P.html
__package_url__: https://github.com/a-slide/pycoQC
__package_doc_url__: https://adrienleger.com/pycoQC
__author_name__: Adrien Leger & Tommaso Leonardi
__author_email__: aleg@ebi.ac.uk
__author_url__: https://adrienleger.com
__package_licence__: GPLv3
__package_licence_url__: https://www.gnu.org/licenses/gpl-3.0.en.html
__minimal_python__: '>=3.6'
__entry_point_1__: pycoQC=pycoQC.__main__:main_pycoQC
__entry_point_2__: Fast5_to_seq_summary=pycoQC.__main__:main_Fast5_to_seq_summary
__entry_point_3__: Barcode_split=pycoQC.__main__:main_Barcode_split
__dependency_1__: numpy>=1.19
__dependency_2__: scipy>=1.5
__dependency_3__: pandas>=1.1
__dependency_4__: plotly==4.1.0
__dependency_5__: jinja2>=2.10
__dependency_6__: h5py>=3.1
__dependency_7__: tqdm>=4.54
__dependency_8__: pysam>=0.16
__classifiers_1__: 'Development Status :: 3 - Alpha'
__classifiers_2__: 'Intended Audience :: Science/Research'
__classifiers_3__: 'Topic :: Scientific/Engineering :: Bio-Informatics'
__classifiers_4__: 'License :: OSI Approved :: GNU General Public License v3 (GPLv3)'
__classifiers_5__: 'Programming Language :: Python :: 3'
managed_files:
.versipy/setup.py: setup.py
.versipy/meta.yaml: meta.yaml
.versipy/__init__.py: pycoQC/__init__.py
.versipy/README.md: README.md
.versipy/mkdocs.yml: mkdocs.yml
.versipy/index.md: docs/index.md
|
