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Source: pycoqc
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Nilesh Patra <npatra974@gmail.com>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-python,
python3,
python3-setuptools
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/pycoqc
Vcs-Git: https://salsa.debian.org/med-team/pycoqc.git
Homepage: https://github.com/a-slide/pycoQC
Rules-Requires-Root: no
Package: pycoqc
Architecture: all
Depends: ${python3:Depends},
${misc:Depends},
python3-numpy,
python3-scipy,
python3-pandas,
python3-plotly (>= 4.1.0),
python3-jinja2,
python3-h5py,
python3-tqdm,
python3-pysam
Description: computes metrics and generates Interactive QC plots
PycoQC computes metrics and generates interactive QC plots for Oxford
Nanopore technologies sequencing data
.
PycoQC relies on the sequencing_summary.txt file generated by Albacore
and Guppy, but if needed it can also generates a summary file from
basecalled fast5 files. The package supports 1D and 1D2 runs generated
with Minion, Gridion and Promethion devices and basecalled with Albacore
1.2.1+ or Guppy 2.1.3+
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