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#!/usr/bin/env python
# -*- coding: utf-8 -*-
# To just compile the cython part in-place:
# python setup.py build_ext --inplace
# To create a distribution package for pip or easy-install:
# python setup.py sdist
# To create wheels package and upload securely
# pip install wheel twine
# python setup.py bdist wheel
from __future__ import print_function
from setuptools import setup, Extension
import sys
from os.path import join, dirname, realpath, exists
from warnings import warn
# The next three lines are necessary for setup.py install to include
# ChangeLog and Documentation of PyCorrFit
from distutils.command.install import INSTALL_SCHEMES
for scheme in INSTALL_SCHEMES.values():
scheme['data'] = scheme['purelib']
# We don't need cython if a .whl package is available.
# Try to import cython and throw a warning if it does not work.
try:
from Cython.Distutils import build_ext
import numpy as np
except ImportError:
print("Cython or NumPy not available. Building extensions "+
"with this setup script will not work:", sys.exc_info())
EXTENSIONS = []
build_ext = None
else:
EXTENSIONS = [Extension("pycorrfit.readfiles.read_pt3_scripts.fib4",
["pycorrfit/readfiles/read_pt3_scripts/fib4.pyx"],
libraries=[],
include_dirs=[np.get_include()]
)
]
# Download documentation if it was not compiled
Documentation = join(dirname(realpath(__file__)), "doc/PyCorrFit_doc.pdf")
webdoc = "https://github.com/FCS-analysis/PyCorrFit/wiki/PyCorrFit_doc.pdf"
if not exists(Documentation):
print("Downloading {} from {}".format(Documentation, webdoc))
import urllib
#testfile = urllib.URLopener()
urllib.urlretrieve(webdoc, Documentation)
# Get the version of PyCorrFit from the Changelog.txt
StaticChangeLog = join(dirname(realpath(__file__)), "ChangeLog.txt")
try:
clfile = open(StaticChangeLog, 'r')
version = clfile.readline().strip()
clfile.close()
except:
warn("Could not find 'ChangeLog.txt'. PyCorrFit version is unknown.")
version = "0.0.0-unknown"
# Parameters
author = u"Paul Müller"
authors = [author]
description = 'Scientific tool for fitting correlation curves on a logarithmic plot.'
name = 'pycorrfit'
year = "2014"
setup(
author=author,
author_email='paul.mueller@biotec.tu-dresden.de',
classifiers= [
'Operating System :: OS Independent',
'Programming Language :: Python :: 2.7',
'Topic :: Scientific/Engineering :: Visualization',
'Intended Audience :: Science/Research'
],
data_files=[('pycorrfit_doc', ['ChangeLog.txt', 'doc/PyCorrFit_doc.pdf'])],
description=description,
long_description=open('README.rst').read() if exists('README.rst') else '',
include_package_data=True,
keywords=["fcs", "fluorescence", "correlation", "spectroscopy",
"tir", "fitting"
],
license="GPL v2",
name=name,
platforms=['ALL'],
url='https://github.com/FCS-analysis/PyCorrFit',
version=version,
# data files
packages=['pycorrfit',
'pycorrfit.models',
'pycorrfit.readfiles',
'pycorrfit.gui',
'pycorrfit.gui.tools',
],
package_dir={'pycorrfit': 'pycorrfit',
'pycorrfit.models': 'pycorrfit/models',
'pycorrfit.readfiles': 'pycorrfit/readfiles',
'pycorrfit.gui': 'pycorrfit/gui',
'pycorrfit.gui.tools': 'pycorrfit/gui/tools',
},
# cython
ext_modules=EXTENSIONS,
cmdclass={'build_ext': build_ext},
# requirements
extras_require = {
# If you need the GUI of this project in your project, add
# "thisproject[GUI]" to your install_requires
# Graphical User Interface
'GUI': ["wxPython", "matplotlib >= 1.1.0", "sympy >= 0.7.2"],
},
install_requires=[
"NumPy >= 1.5.1",
"SciPy >= 0.8.0",
"PyYAML >= 3.09",
"lmfit >= 0.9.2",
],
setup_requires=["cython", 'pytest-runner'],
tests_require=["pytest", "urllib3", "simplejson"],
# scripts
entry_points={
"gui_scripts": ["{name:s}={name:s}:Main".format(
**{"name":name})]
}
)
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