File: test_gdcm_pixel_data.py

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# Copyright 2008-2018 pydicom authors. See LICENSE file for details.
# -*- coding: utf-8 -*-
"""Unit tests for the GDCM Pixel Data handler."""

import os
import sys
import tempfile
import shutil

import pytest

import pydicom
from pydicom.filereader import dcmread
from pydicom.data import get_testdata_files
from pydicom.pixel_data_handlers.util import _convert_YBR_FULL_to_RGB
from pydicom.tag import Tag

gdcm_missing_message = "GDCM is not available in this test environment"
gdcm_im_missing_message = "GDCM is not available or in-memory decoding"\
    " not supported with this GDCM version"
gdcm_present_message = "GDCM is being tested"
have_numpy_testing = True

try:
    import numpy.testing
except ImportError as e:
    have_numpy_testing = False

# Python 3.4 pytest does not have pytest.param?
have_pytest_param = True
try:
    x = pytest.param
except AttributeError:
    have_pytest_param = False

from pydicom.pixel_data_handlers import numpy_handler
have_numpy_handler = numpy_handler.is_available()

from pydicom.pixel_data_handlers import gdcm_handler
HAVE_GDCM = gdcm_handler.is_available()
HAVE_GDCM_IN_MEMORY_SUPPORT = gdcm_handler.HAVE_GDCM_IN_MEMORY_SUPPORT
if HAVE_GDCM:
    import gdcm


empty_number_tags_name = get_testdata_files(
    "reportsi_with_empty_number_tags.dcm")[0]
rtplan_name = get_testdata_files("rtplan.dcm")[0]
rtdose_name = get_testdata_files("rtdose.dcm")[0]
ct_name = get_testdata_files("CT_small.dcm")[0]
mr_name = get_testdata_files("MR_small.dcm")[0]
truncated_mr_name = get_testdata_files("MR_truncated.dcm")[0]
jpeg2000_name = get_testdata_files("JPEG2000.dcm")[0]
jpeg2000_lossless_name = get_testdata_files(
    "MR_small_jp2klossless.dcm")[0]
jpeg_ls_lossless_name = get_testdata_files(
    "MR_small_jpeg_ls_lossless.dcm")[0]
jpeg_lossy_name = get_testdata_files("JPEG-lossy.dcm")[0]
jpeg_lossless_name = get_testdata_files("JPEG-LL.dcm")[0]
jpeg_lossless_odd_data_size_name = get_testdata_files(
    'SC_rgb_small_odd_jpeg.dcm')[0]
deflate_name = get_testdata_files("image_dfl.dcm")[0]
rtstruct_name = get_testdata_files("rtstruct.dcm")[0]
priv_SQ_name = get_testdata_files("priv_SQ.dcm")[0]
nested_priv_SQ_name = get_testdata_files("nested_priv_SQ.dcm")[0]
meta_missing_tsyntax_name = get_testdata_files(
    "meta_missing_tsyntax.dcm")[0]
no_meta_group_length = get_testdata_files(
    "no_meta_group_length.dcm")[0]
gzip_name = get_testdata_files("zipMR.gz")[0]
color_px_name = get_testdata_files("color-px.dcm")[0]
color_pl_name = get_testdata_files("color-pl.dcm")[0]
explicit_vr_le_no_meta = get_testdata_files(
    "ExplVR_LitEndNoMeta.dcm")[0]
explicit_vr_be_no_meta = get_testdata_files(
    "ExplVR_BigEndNoMeta.dcm")[0]
emri_name = get_testdata_files("emri_small.dcm")[0]
emri_big_endian_name = get_testdata_files(
    "emri_small_big_endian.dcm")[0]
emri_jpeg_ls_lossless = get_testdata_files(
    "emri_small_jpeg_ls_lossless.dcm")[0]
emri_jpeg_2k_lossless = get_testdata_files(
    "emri_small_jpeg_2k_lossless.dcm")[0]
color_3d_jpeg_baseline = get_testdata_files(
    "color3d_jpeg_baseline.dcm")[0]
sc_rgb_jpeg_dcmtk_411_YBR_FULL_422 = get_testdata_files(
    "SC_rgb_dcmtk_+eb+cy+np.dcm")[0]
sc_rgb_jpeg_dcmtk_411_YBR_FULL = get_testdata_files(
    "SC_rgb_dcmtk_+eb+cy+n1.dcm")[0]
sc_rgb_jpeg_dcmtk_422_YBR_FULL = get_testdata_files(
    "SC_rgb_dcmtk_+eb+cy+n2.dcm")[0]
sc_rgb_jpeg_dcmtk_444_YBR_FULL = get_testdata_files(
    "SC_rgb_dcmtk_+eb+cy+s4.dcm")[0]
sc_rgb_jpeg_dcmtk_422_YBR_FULL_422 = get_testdata_files(
    "SC_rgb_dcmtk_+eb+cy+s2.dcm")[0]
sc_rgb_jpeg_dcmtk_RGB = get_testdata_files(
    "SC_rgb_dcmtk_+eb+cr.dcm")[0]
sc_rgb_jpeg2k_gdcm_KY = get_testdata_files(
    "SC_rgb_gdcm_KY.dcm")[0]
ground_truth_sc_rgb_jpeg2k_gdcm_KY_gdcm = get_testdata_files(
    "SC_rgb_gdcm2k_uncompressed.dcm")[0]

dir_name = os.path.dirname(sys.argv[0])
save_dir = os.getcwd()


class TestGDCM_JPEG_LS_no_gdcm:
    def setup(self):
        self.unicode_filename = os.path.join(
            tempfile.gettempdir(), "DICOM.dcm")
        shutil.copyfile(jpeg_ls_lossless_name, self.unicode_filename)
        self.jpeg_ls_lossless = dcmread(self.unicode_filename)
        self.mr_small = dcmread(mr_name)
        self.emri_jpeg_ls_lossless = dcmread(emri_jpeg_ls_lossless)
        self.emri_small = dcmread(emri_name)
        self.original_handlers = pydicom.config.pixel_data_handlers
        pydicom.config.pixel_data_handlers = []

    def teardown(self):
        pydicom.config.pixel_data_handlers = self.original_handlers
        os.remove(self.unicode_filename)

    def test_JPEG_LS_PixelArray(self):
        with pytest.raises(NotImplementedError):
            self.jpeg_ls_lossless.pixel_array

    def test_emri_JPEG_LS_PixelArray(self):
        with pytest.raises(NotImplementedError):
            self.emri_jpeg_ls_lossless.pixel_array


class TestGDCM_JPEG2000_no_gdcm:
    def setup(self):
        self.jpeg_2k = dcmread(jpeg2000_name)
        self.jpeg_2k_lossless = dcmread(jpeg2000_lossless_name)
        self.mr_small = dcmread(mr_name)
        self.emri_jpeg_2k_lossless = dcmread(emri_jpeg_2k_lossless)
        self.emri_small = dcmread(emri_name)
        self.sc_rgb_jpeg2k_gdcm_KY = dcmread(sc_rgb_jpeg2k_gdcm_KY)
        self.original_handlers = pydicom.config.pixel_data_handlers
        pydicom.config.pixel_data_handlers = []

    def teardown(self):
        pydicom.config.pixel_data_handlers = self.original_handlers

    def test_JPEG2000(self):
        """JPEG2000: Returns correct values for sample data elements"""
        # XX also tests multiple-valued AT data element
        expected = [Tag(0x0054, 0x0010), Tag(0x0054, 0x0020)]
        got = self.jpeg_2k.FrameIncrementPointer
        assert expected == got

        got = self.jpeg_2k.DerivationCodeSequence[0].CodeMeaning
        expected = 'Lossy Compression'
        assert expected == got

    def test_JPEG2000_pixel_array(self):
        with pytest.raises(NotImplementedError):
            self.jpeg_2k_lossless.pixel_array

    def test_emri_JPEG2000_pixel_array(self):
        with pytest.raises(NotImplementedError):
            self.emri_jpeg_2k_lossless.pixel_array

    def test_jpeg2000_lossy(self):
        with pytest.raises(NotImplementedError):
            self.sc_rgb_jpeg2k_gdcm_KY.pixel_array


class TestGDCM_JPEGlossy_no_gdcm:
    def setup(self):
        self.jpeg_lossy = dcmread(jpeg_lossy_name)
        self.color_3d_jpeg = dcmread(color_3d_jpeg_baseline)
        self.original_handlers = pydicom.config.pixel_data_handlers
        pydicom.config.pixel_data_handlers = []

    def teardown(self):
        pydicom.config.pixel_data_handlers = self.original_handlers

    def test_JPEGlossy(self):
        """JPEG-lossy: Returns correct values for sample data elements"""
        got = self.jpeg_lossy.DerivationCodeSequence[0].CodeMeaning
        expected = 'Lossy Compression'
        assert expected == got

    def test_JPEGlossy_pixel_array(self):
        with pytest.raises(NotImplementedError):
            self.jpeg_lossy.pixel_array

    def test_JPEGBaseline_color_3D_pixel_array(self):
        with pytest.raises(NotImplementedError):
            self.color_3d_jpeg.pixel_array


class TestGDCM_JPEGlossless_no_gdcm:
    def setup(self):
        self.jpeg_lossless = dcmread(jpeg_lossless_name)
        self.original_handlers = pydicom.config.pixel_data_handlers
        pydicom.config.pixel_data_handlers = []

    def teardown(self):
        pydicom.config.pixel_data_handlers = self.original_handlers

    def testJPEGlossless(self):
        """JPEGlossless: Returns correct values for sample data elements"""
        got = self.\
            jpeg_lossless.\
            SourceImageSequence[0].\
            PurposeOfReferenceCodeSequence[0].CodeMeaning
        expected = 'Uncompressed predecessor'
        assert expected == got

    def testJPEGlossless_pixel_array(self):
        """JPEGlossless: Fails gracefully when uncompressed data asked for"""
        with pytest.raises(NotImplementedError):
            self.jpeg_lossless.pixel_array


if have_pytest_param:
    pi_rgb_test_ids = [
        "JPEG_RGB_RGB",
        "JPEG_RGB_411_AS_YBR_FULL",
        "JPEG_RGB_411_AS_YBR_FULL_422",
        "JPEG_RGB_422_AS_YBR_FULL",
        "JPEG_RGB_422_AS_YBR_FULL_422",
        "JPEG_RGB_444_AS_YBR_FULL",
    ]

    pi_rgb_testdata = [
        (sc_rgb_jpeg_dcmtk_RGB,
         "RGB",
         [
             (255, 0, 0),
             (255, 128, 128),
             (0, 255, 0),
             (128, 255, 128),
             (0, 0, 255),
             (128, 128, 255),
             (0, 0, 0),
             (64, 64, 64),
             (192, 192, 192),
             (255, 255, 255),
         ],
         False),
        pytest.param(
            sc_rgb_jpeg_dcmtk_411_YBR_FULL,
            "YBR_FULL",
            [
                (253, 1, 0),
                (253, 128, 132),
                (0, 255, 5),
                (127, 255, 127),
                (1, 0, 254),
                (127, 128, 255),
                (0, 0, 0),
                (64, 64, 64),
                (192, 192, 192),
                (255, 255, 255),
            ],
            True,
            marks=pytest.mark.xfail(
                reason="GDCM does not support "
                "non default jpeg lossy colorspaces")),
        pytest.param(
            sc_rgb_jpeg_dcmtk_411_YBR_FULL_422,
            "YBR_FULL_422",
            [
                (253, 1, 0),
                (253, 128, 132),
                (0, 255, 5),
                (127, 255, 127),
                (1, 0, 254),
                (127, 128, 255),
                (0, 0, 0),
                (64, 64, 64),
                (192, 192, 192),
                (255, 255, 255),
            ],
            True,
            marks=pytest.mark.xfail(
                reason="GDCM does not support "
                "non default jpeg lossy colorspaces")),
        pytest.param(
            sc_rgb_jpeg_dcmtk_422_YBR_FULL,
            "YBR_FULL",
            [
                (254, 0, 0),
                (255, 127, 127),
                (0, 255, 5),
                (129, 255, 129),
                (0, 0, 254),
                (128, 127, 255),
                (0, 0, 0),
                (64, 64, 64),
                (192, 192, 192),
                (255, 255, 255),
            ],
            True,
            marks=pytest.mark.xfail(
                reason="GDCM does not support "
                "non default jpeg lossy colorspaces")),
        pytest.param(
            sc_rgb_jpeg_dcmtk_422_YBR_FULL_422,
            "YBR_FULL_422",
            [
                (254, 0, 0),
                (255, 127, 127),
                (0, 255, 5),
                (129, 255, 129),
                (0, 0, 254),
                (128, 127, 255),
                (0, 0, 0),
                (64, 64, 64),
                (192, 192, 192),
                (255, 255, 255),
            ],
            True,
            marks=pytest.mark.xfail(
                reason="GDCM does not support "
                "non default jpeg lossy colorspaces")),
        pytest.param(
            sc_rgb_jpeg_dcmtk_444_YBR_FULL,
            "YBR_FULL",
            [
                (254, 0, 0),
                (255, 127, 127),
                (0, 255, 5),
                (129, 255, 129),
                (0, 0, 254),
                (128, 127, 255),
                (0, 0, 0),
                (64, 64, 64),
                (192, 192, 192),
                (255, 255, 255),
            ],
            True,
            marks=pytest.mark.xfail(
                reason="GDCM does not support "
                "non default jpeg lossy colorspaces"))]

    with_gdcm_params = [
        pytest.param('File', marks=pytest.mark.skipif(
            not HAVE_GDCM, reason=gdcm_missing_message)),
        pytest.param('InMemory', marks=pytest.mark.skipif(
            not HAVE_GDCM_IN_MEMORY_SUPPORT, reason=gdcm_im_missing_message))]
else:
    # python 3.4 can't parameterize with xfails...
    pi_rgb_test_ids = [
        "JPEG_RGB_RGB",
    ]
    pi_rgb_testdata = [
        (sc_rgb_jpeg_dcmtk_RGB,
         "RGB",
         [
             (255, 0, 0),
             (255, 128, 128),
             (0, 255, 0),
             (128, 255, 128),
             (0, 0, 255),
             (128, 128, 255),
             (0, 0, 0),
             (64, 64, 64),
             (192, 192, 192),
             (255, 255, 255),
         ],
         False),
    ]

    if HAVE_GDCM_IN_MEMORY_SUPPORT:
        with_gdcm_params = ['File', 'InMemory']
    elif HAVE_GDCM:
        with_gdcm_params = ['File']
    else:
        with_gdcm_params = []


class TestsWithGDCM:
    @pytest.fixture(params=with_gdcm_params, scope='class', autouse=True)
    def with_gdcm(self, request):
        original_value = HAVE_GDCM_IN_MEMORY_SUPPORT
        if request.param == 'File':
            gdcm_handler.HAVE_GDCM_IN_MEMORY_SUPPORT = False
        original_handlers = pydicom.config.pixel_data_handlers
        pydicom.config.pixel_data_handlers = [numpy_handler, gdcm_handler]
        yield
        gdcm_handler.HAVE_GDCM_IN_MEMORY_SUPPORT = original_value
        pydicom.config.pixel_data_handlers = original_handlers

    @pytest.fixture(scope='class')
    def unicode_filename(self):
        unicode_filename = os.path.join(
            tempfile.gettempdir(), "DICOM.dcm")
        shutil.copyfile(jpeg_ls_lossless_name, unicode_filename)
        yield unicode_filename
        os.remove(unicode_filename)

    @pytest.fixture
    def jpeg_ls_lossless(self, unicode_filename):
        return dcmread(unicode_filename)

    @pytest.fixture
    def sc_rgb_jpeg2k_gdcm_KY(self):
        return dcmread(sc_rgb_jpeg2k_gdcm_KY)

    @pytest.fixture(scope='class')
    def ground_truth_sc_rgb_jpeg2k_gdcm_KY_gdcm(self):
        return dcmread(ground_truth_sc_rgb_jpeg2k_gdcm_KY_gdcm)

    @pytest.fixture
    def jpeg_2k(self):
        return dcmread(jpeg2000_name)

    @pytest.fixture
    def jpeg_2k_lossless(self):
        return dcmread(jpeg2000_lossless_name)

    @pytest.fixture(scope='class')
    def mr_small(self):
        return dcmread(mr_name)

    @pytest.fixture(scope='class')
    def emri_small(self):
        return dcmread(emri_name)

    @pytest.fixture
    def emri_jpeg_ls_lossless(self):
        return dcmread(emri_jpeg_ls_lossless)

    @pytest.fixture
    def emri_jpeg_2k_lossless(self):
        return dcmread(emri_jpeg_2k_lossless)

    @pytest.fixture
    def color_3d_jpeg(self):
        return dcmread(color_3d_jpeg_baseline)

    @pytest.fixture
    def jpeg_lossy(self):
        return dcmread(jpeg_lossy_name)

    @pytest.fixture
    def jpeg_lossless(self):
        return dcmread(jpeg_lossless_name)

    @pytest.fixture
    def jpeg_lossless_odd_data_size(self):
        return dcmread(jpeg_lossless_odd_data_size_name)

    def test_JPEG_LS_PixelArray(self, jpeg_ls_lossless, mr_small):
        a = jpeg_ls_lossless.pixel_array
        b = mr_small.pixel_array
        assert a.mean() == b.mean()
        assert a.flags.writeable

    def test_emri_JPEG_LS_PixelArray_with_gdcm(self, emri_jpeg_ls_lossless,
                                               emri_small):
        a = emri_jpeg_ls_lossless.pixel_array
        b = emri_small.pixel_array
        assert a.mean() == b.mean()
        assert a.flags.writeable

    def test_JPEG2000(self, jpeg_2k):
        """JPEG2000: Returns correct values for sample data elements"""
        # XX also tests multiple-valued AT data element
        expected = [Tag(0x0054, 0x0010), Tag(0x0054, 0x0020)]
        got = jpeg_2k.FrameIncrementPointer
        assert expected == got

        got = jpeg_2k.DerivationCodeSequence[0].CodeMeaning
        assert 'Lossy Compression' == got

    def test_JPEG2000PixelArray(self, jpeg_2k_lossless, mr_small):
        a = jpeg_2k_lossless.pixel_array
        b = mr_small.pixel_array
        assert a.mean() == b.mean()
        assert a.flags.writeable

    def test_decompress_using_gdcm(self, jpeg_2k_lossless, mr_small):
        jpeg_2k_lossless.decompress(handler_name='gdcm')
        a = jpeg_2k_lossless.pixel_array
        b = mr_small.pixel_array
        assert a.mean() == b.mean()

    def test_emri_JPEG2000PixelArray(self, emri_jpeg_2k_lossless, emri_small):
        a = emri_jpeg_2k_lossless.pixel_array
        b = emri_small.pixel_array
        assert a.mean() == b.mean()
        assert a.flags.writeable

    def test_JPEG2000_lossy(self, sc_rgb_jpeg2k_gdcm_KY,
                            ground_truth_sc_rgb_jpeg2k_gdcm_KY_gdcm):
        a = sc_rgb_jpeg2k_gdcm_KY.pixel_array
        b = ground_truth_sc_rgb_jpeg2k_gdcm_KY_gdcm.pixel_array
        if have_numpy_testing:
            numpy.testing.assert_array_equal(a, b)
        else:
            assert a.mean() == b.mean()

        assert a.flags.writeable

    def test_JPEGlossless(self, jpeg_lossless):
        """JPEGlossless: Returns correct values for sample data elements"""
        got = jpeg_lossless.\
            SourceImageSequence[0].\
            PurposeOfReferenceCodeSequence[0].CodeMeaning
        assert 'Uncompressed predecessor' == got

    def test_JPEGlosslessPixelArray(self, jpeg_lossless):
        """JPEGlossless: Fails gracefully when uncompressed data asked for"""
        a = jpeg_lossless.pixel_array
        assert (1024, 256) == a.shape
        # this test points were manually identified in Osirix viewer
        assert 227 == a[420, 140]
        assert 105 == a[230, 120]
        assert a.flags.writeable

    def test_JPEGlossless_odd_data_size(self, jpeg_lossless_odd_data_size):
        pixel_data = jpeg_lossless_odd_data_size.pixel_array
        assert 27 == pixel_data.nbytes
        assert (3, 3, 3) == pixel_data.shape

    def test_JPEGlossy(self, jpeg_lossy):
        """JPEG-lossy: Returns correct values for sample data elements"""
        got = jpeg_lossy.DerivationCodeSequence[0].CodeMeaning
        assert 'Lossy Compression' == got

    def test_JPEGlossyPixelArray(self, jpeg_lossy):
        a = jpeg_lossy.pixel_array
        assert (1024, 256) == a.shape
        # this test points were manually identified in Osirix viewer
        assert 244 == a[420, 140]
        assert 95 == a[230, 120]
        assert a.flags.writeable

    def test_JPEGBaselineColor3DPixelArray(self, color_3d_jpeg):
        assert "YBR_FULL_422" == color_3d_jpeg.PhotometricInterpretation
        a = color_3d_jpeg.pixel_array

        assert a.flags.writeable
        assert (120, 480, 640, 3) == a.shape
        a = _convert_YBR_FULL_to_RGB(a)
        # this test points were manually identified in Osirix viewer
        assert (41, 41, 41) == tuple(a[3, 159, 290, :])
        assert (57, 57, 57) == tuple(a[3, 169, 290, :])
        assert "YBR_FULL_422" == color_3d_jpeg.PhotometricInterpretation

    @pytest.mark.parametrize(
        "image,PhotometricInterpretation,results,convert_yuv_to_rgb",
        pi_rgb_testdata,
        ids=pi_rgb_test_ids)
    def test_PI_RGB(self, image, PhotometricInterpretation, results,
                    convert_yuv_to_rgb):
        t = dcmread(image)
        assert t.PhotometricInterpretation == PhotometricInterpretation
        a = t.pixel_array

        assert a.flags.writeable

        assert (100, 100, 3) == a.shape
        if convert_yuv_to_rgb:
            a = _convert_YBR_FULL_to_RGB(a)
        # this test points are from the ImageComments tag
        assert results[0] == tuple(a[5, 50, :])
        assert results[1] == tuple(a[15, 50, :])
        assert results[2] == tuple(a[25, 50, :])
        assert results[3] == tuple(a[35, 50, :])
        assert results[4] == tuple(a[45, 50, :])
        assert results[5] == tuple(a[55, 50, :])
        assert results[6] == tuple(a[65, 50, :])
        assert results[7] == tuple(a[75, 50, :])
        assert results[8] == tuple(a[85, 50, :])
        assert results[9] == tuple(a[95, 50, :])
        assert PhotometricInterpretation == t.PhotometricInterpretation


class TestSupportFunctions:
    @pytest.fixture(scope='class')
    def dataset_2d(self):
        return dcmread(mr_name)

    @pytest.fixture(scope='class')
    def dataset_2d_compressed(self):
        return dcmread(jpeg2000_name)

    @pytest.fixture(scope='class')
    def dataset_3d(self):
        return dcmread(color_3d_jpeg_baseline)

    @pytest.mark.skipif(not HAVE_GDCM_IN_MEMORY_SUPPORT,
                        reason=gdcm_im_missing_message)
    def test_create_data_element_from_uncompressed_2d_dataset(
            self, dataset_2d):
        data_element = gdcm_handler.create_data_element(dataset_2d)

        assert 0x7fe0 == data_element.GetTag().GetGroup()
        assert 0x0010 == data_element.GetTag().GetElement()
        assert data_element.GetSequenceOfFragments() is None
        assert data_element.GetByteValue() is not None

    @pytest.mark.skipif(not HAVE_GDCM_IN_MEMORY_SUPPORT,
                        reason=gdcm_im_missing_message)
    def test_create_data_element_from_compressed_2d_dataset(
            self, dataset_2d_compressed):
        data_element = gdcm_handler.create_data_element(dataset_2d_compressed)

        assert 0x7fe0 == data_element.GetTag().GetGroup()
        assert 0x0010 == data_element.GetTag().GetElement()
        assert data_element.GetSequenceOfFragments() is not None
        assert data_element.GetByteValue() is None

    @pytest.mark.skipif(not HAVE_GDCM_IN_MEMORY_SUPPORT,
                        reason=gdcm_im_missing_message)
    def test_create_data_element_from_3d_dataset(self, dataset_3d):
        data_element = gdcm_handler.create_data_element(dataset_3d)

        assert 0x7fe0 == data_element.GetTag().GetGroup()
        assert 0x0010 == data_element.GetTag().GetElement()
        assert data_element.GetSequenceOfFragments() is not None
        assert data_element.GetByteValue() is None

    @pytest.mark.skipif(not HAVE_GDCM_IN_MEMORY_SUPPORT,
                        reason=gdcm_im_missing_message)
    def test_create_image_from_2d_dataset(self, dataset_2d):
        data_element = gdcm_handler.create_data_element(dataset_2d)
        image = gdcm_handler.create_image(dataset_2d, data_element)
        assert 2 == image.GetNumberOfDimensions()
        assert [dataset_2d.Rows, dataset_2d.Columns] == image.GetDimensions()
        pi_type = gdcm.PhotometricInterpretation.GetPIType(
            dataset_2d.PhotometricInterpretation
        )
        assert pi_type == image.GetPhotometricInterpretation().GetType()

        uid = str.__str__(dataset_2d.file_meta.TransferSyntaxUID)
        assert uid == image.GetTransferSyntax().GetString()
        pixel_format = image.GetPixelFormat()
        assert dataset_2d.SamplesPerPixel == pixel_format.GetSamplesPerPixel()
        assert dataset_2d.BitsAllocated == pixel_format.GetBitsAllocated()
        assert dataset_2d.BitsStored == pixel_format.GetBitsStored()
        assert dataset_2d.HighBit == pixel_format.GetHighBit()
        px_repr = dataset_2d.PixelRepresentation
        assert px_repr == pixel_format.GetPixelRepresentation()

    @pytest.mark.skipif(not HAVE_GDCM_IN_MEMORY_SUPPORT,
                        reason=gdcm_im_missing_message)
    def test_create_image_from_3d_dataset(self, dataset_3d):
        data_element = gdcm_handler.create_data_element(dataset_3d)
        image = gdcm_handler.create_image(dataset_3d, data_element)
        assert 3 == image.GetNumberOfDimensions()
        assert [
            dataset_3d.Columns, dataset_3d.Rows,
            int(dataset_3d.NumberOfFrames)
        ] == image.GetDimensions()
        pi = gdcm.PhotometricInterpretation.GetPIType(
            dataset_3d.PhotometricInterpretation
        )
        assert pi == image.GetPhotometricInterpretation().GetType()
        uid = str.__str__(dataset_3d.file_meta.TransferSyntaxUID)
        assert uid == image.GetTransferSyntax().GetString()
        pixel_format = image.GetPixelFormat()
        assert dataset_3d.SamplesPerPixel == pixel_format.GetSamplesPerPixel()
        assert dataset_3d.BitsAllocated == pixel_format.GetBitsAllocated()
        assert dataset_3d.BitsStored == pixel_format.GetBitsStored()
        assert dataset_3d.HighBit == pixel_format.GetHighBit()
        px_repr = dataset_3d.PixelRepresentation
        assert px_repr == pixel_format.GetPixelRepresentation()
        planar = dataset_3d.PlanarConfiguration
        assert planar == image.GetPlanarConfiguration()

    @pytest.mark.skipif(not HAVE_GDCM, reason=gdcm_missing_message)
    def test_create_image_reader_with_string(self):
        image_reader = gdcm_handler.create_image_reader(mr_name)
        assert image_reader is not None
        assert image_reader.Read()