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Author: Andreas Tille <tille@debian.org>
Last-Update: 2021-12-08
Description: Ignore test due to wrong gdcm usage.
See https://lists.debian.org/debian-med/2021/12/msg00061.html
--- a/pydicom/tests/test_gdcm_pixel_data.py
+++ b/pydicom/tests/test_gdcm_pixel_data.py
@@ -161,6 +161,7 @@ class TestGDCM_JPEG2000_no_gdcm:
self.sc_rgb_jpeg2k_gdcm_KY.pixel_array
+@pytest.mark.skip("When building a Debian package we can not download anything")
class TestGDCM_JPEGlossy_no_gdcm:
def setup_method(self):
self.jpeg_lossy = dcmread(jpeg_lossy_name)
@@ -171,6 +172,7 @@ class TestGDCM_JPEGlossy_no_gdcm:
def teardown_method(self):
pydicom.config.pixel_data_handlers = self.original_handlers
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_JPEGlossy(self):
"""JPEG-lossy: Returns correct values for sample data elements"""
got = self.jpeg_lossy.DerivationCodeSequence[0].CodeMeaning
@@ -196,6 +198,7 @@ class TestGDCM_JPEGlossless_no_gdcm:
def teardown_method(self):
pydicom.config.pixel_data_handlers = self.original_handlers
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def testJPEGlossless(self):
"""JPEGlossless: Returns correct values for sample data elements"""
got = self.\
@@ -213,7 +216,8 @@ class TestGDCM_JPEGlossless_no_gdcm:
class TestsWithGDCM:
- @pytest.fixture(params=with_gdcm_params, scope='class', autouse=True)
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
+ #@pytest.fixture(params=with_gdcm_params, scope='class', autouse=True)
def with_gdcm(self, request):
original_value = HAVE_GDCM_IN_MEMORY_SUPPORT
if request.param == 'File':
@@ -272,10 +276,12 @@ class TestsWithGDCM:
def color_3d_jpeg(self):
return dcmread(color_3d_jpeg_baseline)
+ @pytest.mark.skip("When building a Debian package we can not download anything")
@pytest.fixture
def jpeg_lossy(self):
return dcmread(jpeg_lossy_name)
+ @pytest.mark.skip("When building a Debian package we can not download anything")
@pytest.fixture
def jpeg_lossless(self):
return dcmread(jpeg_lossless_name)
@@ -284,12 +290,14 @@ class TestsWithGDCM:
def jpeg_lossless_odd_data_size(self):
return dcmread(jpeg_lossless_odd_data_size_name)
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_JPEG_LS_PixelArray(self, jpeg_ls_lossless, mr_small):
a = jpeg_ls_lossless.pixel_array
b = mr_small.pixel_array
assert a.mean() == b.mean()
assert a.flags.writeable
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_emri_JPEG_LS_PixelArray_with_gdcm(self, emri_jpeg_ls_lossless,
emri_small):
a = emri_jpeg_ls_lossless.pixel_array
@@ -297,6 +305,7 @@ class TestsWithGDCM:
assert a.mean() == b.mean()
assert a.flags.writeable
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_JPEG2000(self, jpeg_2k):
"""JPEG2000: Returns correct values for sample data elements"""
# XX also tests multiple-valued AT data element
@@ -307,24 +316,28 @@ class TestsWithGDCM:
got = jpeg_2k.DerivationCodeSequence[0].CodeMeaning
assert 'Lossy Compression' == got
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_JPEG2000PixelArray(self, jpeg_2k_lossless, mr_small):
a = jpeg_2k_lossless.pixel_array
b = mr_small.pixel_array
assert a.mean() == b.mean()
assert a.flags.writeable
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_decompress_using_gdcm(self, jpeg_2k_lossless, mr_small):
jpeg_2k_lossless.decompress(handler_name='gdcm')
a = jpeg_2k_lossless.pixel_array
b = mr_small.pixel_array
assert a.mean() == b.mean()
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_emri_JPEG2000PixelArray(self, emri_jpeg_2k_lossless, emri_small):
a = emri_jpeg_2k_lossless.pixel_array
b = emri_small.pixel_array
assert a.mean() == b.mean()
assert a.flags.writeable
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_JPEG2000_lossy(self, sc_rgb_jpeg2k_gdcm_KY,
ground_truth_sc_rgb_jpeg2k_gdcm_KY_gdcm):
a = sc_rgb_jpeg2k_gdcm_KY.pixel_array
@@ -336,6 +349,7 @@ class TestsWithGDCM:
assert a.flags.writeable
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_JPEGlosslessPixelArray(self, jpeg_lossless):
"""JPEGlossless: Fails gracefully when uncompressed data asked for"""
a = jpeg_lossless.pixel_array
@@ -345,16 +359,19 @@ class TestsWithGDCM:
assert 105 == a[230, 120]
assert a.flags.writeable
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_JPEGlossless_odd_data_size(self, jpeg_lossless_odd_data_size):
pixel_data = jpeg_lossless_odd_data_size.pixel_array
assert 27 == pixel_data.nbytes
assert (3, 3, 3) == pixel_data.shape
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_JPEGlossy(self, jpeg_lossy):
"""JPEG-lossy: Returns correct values for sample data elements"""
got = jpeg_lossy.DerivationCodeSequence[0].CodeMeaning
assert 'Lossy Compression' == got
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_JPEGlossyPixelArray(self, jpeg_lossy):
a = jpeg_lossy.pixel_array
assert (1024, 256) == a.shape
@@ -363,6 +380,7 @@ class TestsWithGDCM:
assert 95 == a[230, 120]
assert a.flags.writeable
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_JPEGBaselineColor3DPixelArray(self, color_3d_jpeg):
assert "YBR_FULL_422" == color_3d_jpeg.PhotometricInterpretation
a = color_3d_jpeg.pixel_array
@@ -402,6 +420,7 @@ class TestsWithGDCM:
assert results[9] == tuple(a[95, 50, :])
assert pi == t.PhotometricInterpretation
+ @pytest.mark.skip("When building a Debian package we can not download anything")
def test_bytes_io(self):
"""Test using a BytesIO as the dataset source."""
with open(jpeg2000_name, 'rb') as f:
@@ -412,6 +431,7 @@ class TestsWithGDCM:
assert (1024, 256) == arr.shape
assert arr.flags.writeable
+ @pytest.mark.skip("Ignore test due to wrong gdcm usage. (See https://lists.debian.org/debian-med/2021/12/msg00061.html)")
def test_pixel_rep_mismatch(self):
"""Test mismatched j2k sign and Pixel Representation."""
ds = dcmread(J2KR_16_13_1_1_1F_M2_MISMATCH)
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