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.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.16.
.TH PYENSEMBL "1" "May 2021" "pyensembl 1.9.1+ds" "User Commands"
.SH NAME
pyensembl \- installs data from the Ensembl genome database
.SH DESCRIPTION
usage:
Manipulate pyensembl's local cache.
.IP
pyensembl {install, delete, delete\-sequence\-cache} [\-\-release XXX \fB\-\-species\fR human...]
.SS "To install particular Ensembl human release(s):"
.IP
pyensembl install \fB\-\-release\fR 75 77
.SS "To install particular Ensembl mouse release(s):"
.IP
pyensembl install \fB\-\-release\fR 75 77 \fB\-\-species\fR mouse
.SS "To delete all downloaded and cached data for a particular Ensembl release:"
.IP
pyensembl delete\-all\-files \fB\-\-release\fR 75 \fB\-\-species\fR human
.SS "To delete only cached data related to transcript and protein sequences:"
.IP
pyensembl delete\-index\-files \fB\-\-release\fR 75
.SS "To list all installed genomes:"
.IP
pyensembl list
.SS "To install a genome from source files:"
.TP
pyensembl install
\fB\-\-reference\-name\fR "GRCh38" \fB\-\-gtf\fR URL_OR_PATH \fB\-\-transcript\-fasta\fR URL_OR_PATH \fB\-\-protein\-fasta\fR URL_OR_PATH
.PP
pyensembl: error: the following arguments are required: action
.SH AUTHOR
This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.
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