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# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from __future__ import print_function
import os
import re
# TODO: replace setup.py with pyproject.toml
from setuptools import setup
package_name = "pyensembl"
current_directory = os.path.dirname(__file__)
readme_filename = "README.md"
readme_path = os.path.join(current_directory, readme_filename)
github_url = "https://github.com/openvax/%s" % package_name
try:
with open(readme_path, "r") as f:
readme_markdown = f.read()
except IOError as e:
print(e)
print("Failed to open %s" % readme_path)
readme_markdown = ""
with open("%s/version.py" % package_name, "r") as f:
version = re.search(
r'^__version__\s*=\s*[\'"]([^\'"]*)[\'"]', f.read(), re.MULTILINE
).group(1)
if not version:
raise RuntimeError("Cannot find version information")
if __name__ == "__main__":
with open("requirements.txt") as f:
requirements = [l.strip() for l in f]
setup(
name=package_name,
version=version,
description="Python interface to Ensembl reference genome metadata",
author="Alex Rubinsteyn",
author_email="alex.rubinsteyn@unc.edu",
url=github_url,
license="http://www.apache.org/licenses/LICENSE-2.0.html",
entry_points={
"console_scripts": ["pyensembl = %s.shell:run" % package_name],
},
classifiers=[
"Development Status :: 4 - Beta",
"Environment :: Console",
"Operating System :: OS Independent",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: Apache Software License",
"Programming Language :: Python",
"Topic :: Scientific/Engineering :: Bio-Informatics",
],
install_requires=requirements,
long_description=readme_markdown,
long_description_content_type="text/markdown",
packages=[package_name],
package_data={
package_name: ["logging.conf", "../requirements.txt"],
},
)
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