File: test_shell.py

package info (click to toggle)
pyensembl 2.3.13-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 612 kB
  • sloc: python: 4,199; makefile: 208; sh: 74
file content (11 lines) | stat: -rw-r--r-- 407 bytes parent folder | download | duplicates (2) 
1
2
3
4
5
6
7
8
9
10
11
 
from pyensembl.shell import parser, all_combinations_of_ensembl_genomes
from .common import eq_


def test_genome_selection_grch38():
    args = parser.parse_args(["install", "--release", "100", "--species", "human"])
    genomes = all_combinations_of_ensembl_genomes(args)
    assert len(genomes) == 1
    genome = genomes[0]
    eq_(genome.species.latin_name, "homo_sapiens")
    eq_(genome.release, 100)