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# coding: utf-8
#
# Project: Azimuthal integration
# https://github.com/silx-kit/pyFAI
#
# Copyright (C) 2015-2019 European Synchrotron Radiation Facility, Grenoble, France
#
# Principal author: Jérôme Kieffer (Jerome.Kieffer@ESRF.eu)
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
"""Module function to manage poni files.
"""
__author__ = "Jerome Kieffer"
__license__ = "MIT"
__copyright__ = "European Synchrotron Radiation Facility, Grenoble, France"
__date__ = "08/01/2021"
__docformat__ = 'restructuredtext'
import logging
from . import ponifile
from .. import detectors
from .. import method_registry
_logger = logging.getLogger(__name__)
def _normalize_v1_darkflat_files(config, key):
"""Normalize dark and flat filename list from the version 1 to version 2.
"""
if key not in config:
return
filenames = config[key]
if filenames is None:
return
if isinstance(filenames, list):
# Already a list, it's fine
return
if isinstance(filenames, (str,)):
if "," in filenames:
# Create a list from a coma separated string list
filenames = filenames.split(",")
filenames = [f.strip() for f in filenames]
config[key] = filenames
def _patch_v1_to_v2(config):
"""Rework the config dictionary from version 1 to version 2
:param dict config: Dictionary reworked inplace.
"""
value = config.pop("poni", None)
detector = None
if value:
# Use the poni file while it is not overwrited by a key of the config
# dictionary
poni = ponifile.PoniFile(value)
if "wavelength" not in config:
config["wavelength"] = poni.wavelength
if "dist" not in config:
config["dist"] = poni.dist
if "poni1" not in config:
config["poni1"] = poni.poni1
if "poni2" not in config:
config["poni2"] = poni.poni2
if "rot1" not in config:
config["rot1"] = poni.rot1
if "rot2" not in config:
config["rot2"] = poni.rot2
if "rot3" not in config:
config["rot3"] = poni.rot3
if "detector" not in config:
detector = poni.detector
# detector
value = config.pop("detector", None)
if value:
# NOTE: pixel1/pixel2/splineFile was not parsed here
detector_name = value.lower()
detector = detectors.detector_factory(detector_name)
if detector_name == "detector":
value = config.pop("pixel1", None)
if value:
detector.set_pixel1(value)
value = config.pop("pixel2", None)
if value:
detector.set_pixel2(value)
else:
# Drop it as it was not really used
_ = config.pop("pixel1", None)
_ = config.pop("pixel2", None)
splineFile = config.pop("splineFile", None)
if splineFile:
detector.set_splineFile(splineFile)
if detector is not None:
# Feed the detector as version2
config["detector"] = detector.__class__.__name__
config["detector_config"] = detector.get_config()
_normalize_v1_darkflat_files(config, "dark_current")
_normalize_v1_darkflat_files(config, "flat_field")
method = config.get("method", None)
use_opencl = config.pop("do_OpenCL", False)
if use_opencl is not None and method is not None:
if use_opencl:
_logger.warning("Both 'method' and 'do_OpenCL' are defined. 'do_OpenCL' is ignored.")
if method is None:
if use_opencl:
method = "csr_ocl"
else:
method = "splitbbox"
config["method"] = method
config["version"] = 2
config["application"] = "pyfai-integrate"
def _patch_v2_to_v3(config):
"""Rework the config dictionary from version 2 to version 3
:param dict config: Dictionary reworked inplace.
"""
old_method = config.pop("method")
method = method_registry.Method.parsed(old_method)
config["method"] = method.split, method.algo, method.impl
config["opencl_device"] = method.target
config["version"] = 3
def normalize(config, inplace=False):
"""Normalize the configuration file to the one supported internally\
(the last one).
:param dict config: The configuration dictionary to read
:param bool inplace: In true, the dictionary is edited inplace
:raise ValueError: If the configuration do not match.
"""
if not inplace:
config = config.copy()
version = config.get("version", 1)
if version == 1:
# NOTE: Previous way to describe an integration process before pyFAI 0.17
_patch_v1_to_v2(config)
version = config["version"]
if version == 2:
_patch_v2_to_v3(config)
application = config.get("application", None)
if application != "pyfai-integrate":
raise ValueError("Configuration application do not match. Found '%s'" % application)
if version > 3:
_logger.error("Configuration file %d too recent. This version of pyFAI maybe too old to read this configuration", version)
return config
class ConfigurationReader(object):
def __init__(self, config):
":param config: dictonary"
self._config = config
def pop_ponifile(self):
"""Returns the geometry subpart of the configuration"""
dico = {"poni_version":2}
mapping = { i:i for i in ('wavelength', 'poni1', 'poni2',
'rot1', 'rot2', 'rot3', 'detector', 'detector_config')}
mapping['dist'] = "distance"
for key1, key2 in mapping.items():
if key1 in self._config:
value = self._config.pop(key1)
if value is not None:
dico[key2] = value
return ponifile.PoniFile(dico)
def pop_detector(self):
"""
Returns the detector stored in the json configuration.
:rtype: pyFAI.detectors.Detector
"""
detector_class = self._config.pop("detector", None)
if detector_class is not None:
# NOTE: Default way to describe a detector since pyFAI 0.17
detector_config = self._config.pop("detector_config", None)
detector = detectors.detector_factory(detector_class, config=detector_config)
return detector
return None
def pop_method(self, default=None):
"""Returns a Method from the method field from the json dictionary.
:rtype: pyFAI.method_registry.Method
"""
do_2d = self._config.pop("do_2D", 1)
dim = 2 if do_2d else 1
method = self._config.pop("method", default)
target = self._config.pop("opencl_device", None)
if isinstance(target, list):
# Patch list to tuple
target = tuple(target)
if method is None:
method = method_registry.Method(dim, "*", "*", "*", target=None)
elif isinstance(method, (str,)):
method = method_registry.Method.parsed(method)
method = method.fixed(dim=dim, target=target)
elif isinstance(method, (list, tuple)):
if len(method) != 3:
raise TypeError("Method size %s unsupported." % len(method))
split, algo, impl = method
method = method_registry.Method(dim, split, algo, impl, target)
else:
raise TypeError("Method type %s unsupported." % type(method))
return method
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