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Installation
============
You can install pyfastx via the Python Package Index (PyPI) (**recommended**) or from source.
Make sure you have installed both `pip <https://pip.pypa.io/en/stable/installing/>`_ and Python before starting.
Currently, ``pyfastx`` supports Python 3.6, 3.7, 3.8, 3.9, 3.10, 3.11 and can work on Windows, Linux, MacOS.
Install from PyPI
-----------------
::
pip install pyfastx
Update pyfastx using ``pip``
::
pip install -U pyfastx
Install from source
-------------------
``pyfastx`` depends on `zlib <https://zlib.net/>`_ and `sqlite3 <https://www.sqlite.org/index.html>`_. If you want to compile and install pyfastx from source code. First, you should install zlib and sqlite3.
On Centos
::
yum install zlib-devel
yum install sqlite-devel
On Ubuntu
::
apt install zlib1g-dev
apt install libsqlite3-dev
On Windows and MacOS, it will automatically download zlib and sqlite3 library to build.
Second, clone pyfastx using ``git`` or download latest `release <https://github.com/lmdu/pyfastx/releases>`_:
::
git clone https://github.com/lmdu/pyfastx.git
Then, ``cd`` to the pyfastx folder and run install command:
::
cd pyfastx
python setup.py install
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