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# -*- coding: utf-8 -*-
###################################################################################
# Fits, Elastic constants fits : Alessandro Mirone
# European Synchrotron Radiation Facility
###################################################################################
#distutils: extra_compile_args = -fopenmp
# distutils: language = c++
from __future__ import print_function
import cython
import numpy
cimport numpy
from libc.stdio cimport printf
# pagbone_outputfile, threshold, maskbone_outputfile, myrank, nprocs, ncpus, MemPerProc
cdef extern from "segment.h":
cdef void segment(
char *,
float,
int,
char *,
int,
int,
int,
long int,
int , int , int ,int) nogil
cdef extern from "segment.h":
cdef void spilla ( char *,
char *,
char *,
float ,
char *,
int ,
int ,
int ,
long int ,
int , int , int ) nogil
cdef extern from "segment.h":
cdef void incolla ( char *,
char *,
char *,
char *,
int ,
int ,
int ,
long int ,
int , int , int ) nogil
@cython.boundscheck(False)
def pysegment( pagbone_outputfile_py,
float threshold,
int medianR,
maskbone_outputfile_py,
int myrank,
int nprocs,
int ncpus,
long int MemPerProc,
int SIZEZ, int SIZEY, int SIZEX, int dilatation) :
print (" NCPUS ", ncpus)
cdef bytes py_bytes = pagbone_outputfile_py.encode()
cdef char* pagbone_outputfile = py_bytes
cdef py_bytes2 = maskbone_outputfile_py.encode()
cdef char* maskbone_outputfile = py_bytes2
segment( pagbone_outputfile,
threshold,
medianR,
maskbone_outputfile,
myrank,
nprocs,
ncpus,
MemPerProc,
SIZEZ, SIZEY, SIZEX, dilatation)
@cython.boundscheck(False)
def pyspilla( pagbone_outputfile_py,
absbone_outputfile_py,
maskbone_outputfile_py,
float threshold,
corrbone_outputfile_py,
int myrank,
int nprocs,
int ncpus,
long int MemPerProc,
int SIZEZ, int SIZEY, int SIZEX) :
print( " NCPUS ", ncpus)
cdef bytes py_bytes0 = pagbone_outputfile_py.encode()
cdef char* pagbone_outputfile = py_bytes0
cdef bytes py_bytes = absbone_outputfile_py.encode()
cdef char* absbone_outputfile = py_bytes
print( " ------------ " )
print( absbone_outputfile_py)
print( " ------------ " )
printf(" %s \n", absbone_outputfile );
cdef py_bytes2 = maskbone_outputfile_py.encode()
cdef char* maskbone_outputfile = py_bytes2
cdef py_bytes3 = corrbone_outputfile_py.encode()
cdef char* corrbone_outputfile = py_bytes3
print( " ------------ " )
print( absbone_outputfile_py)
print( " ------------ " )
printf(" %s \n", absbone_outputfile );
spilla( pagbone_outputfile,
absbone_outputfile,
maskbone_outputfile,
threshold,
corrbone_outputfile,
myrank,
nprocs,
ncpus,
MemPerProc,
SIZEZ, SIZEY, SIZEX )
@cython.boundscheck(False)
def pyincolla( pagbone_outputfile_py,
maskbone_outputfile_py,
correctedvol_outputfile_py,
outputfile_py,
int myrank,
int nprocs,
int ncpus,
long int MemPerProc,
int SIZEZ, int SIZEY, int SIZEX) :
print( " NCPUS ", ncpus)
cdef bytes py_bytes = pagbone_outputfile_py.encode()
# cdef char* pagbone_outputfile_py = py_bytes
cdef char* pagbone_outputfile = py_bytes
cdef py_bytes2 = maskbone_outputfile_py.encode()
cdef char* maskbone_outputfile = py_bytes2
cdef py_bytes3 = correctedvol_outputfile_py.encode()
cdef char* correctedvol_outputfile = py_bytes3
cdef py_bytes4 = outputfile_py.encode()
cdef char* outputfile = py_bytes4
incolla( pagbone_outputfile,
maskbone_outputfile,
correctedvol_outputfile,
outputfile,
myrank,
nprocs,
ncpus,
MemPerProc,
SIZEZ, SIZEY, SIZEX )
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