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#/*##########################################################################
# Copyright (C) 2004-2014 V.A. Sole, European Synchrotron Radiation Facility
#
# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
# the ESRF by the Software group.
#
# This file is free software; you can redistribute it and/or modify it
# under the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation; either version 2 of the License, or (at your option)
# any later version.
#
# This file is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
# details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this library; if not, write to the Free Software
# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
#
# Please contact the ESRF industrial unit (industry@esrf.fr) if this license
# is a problem for you.
#
#############################################################################*/
__author__ = "V.A. Sole - ESRF Data Analysis"
__contact__ = "sole@esrf.fr"
__license__ = "LGPL2+"
__copyright__ = "European Synchrotron Radiation Facility, Grenoble, France"
import os
import h5py
import Object3DStack
from PyMca5.PyMcaGui import PyMcaFileDialogs
from PyMca5.PyMcaGui import PyMcaQt as qt
class ChimeraStack(Object3DStack.Object3DStack):
pass
MENU_TEXT = '4D Chimera'
def getObject3DInstance(config=None):
#for the time being a former configuration
#for serializing purposes is not implemented
#I do the import here for the case PyMca is not installed
#because the modules could be instanstiated without using
#this method
try:
from PyMca5.PyMcaIO import EDFStack
except ImportError:
import EDFStack
fileTypeList = ['Chimera Stack (*cmp)',
'Chimera Stack (*)']
old = PyMcaFileDialogs.PyMcaDirs.nativeFileDialogs * 1
#PyMcaFileDialogs.PyMcaDirs.nativeFileDialogs = False
fileList, filterUsed = PyMcaFileDialogs.getFileList(
parent=None,
filetypelist=fileTypeList,
message="Please select the object file(s)",
mode="OPEN",
getfilter=True)
PyMcaFileDialogs.PyMcaDirs.nativeFileDialogs = old
if not len(fileList):
return None
if filterUsed == fileTypeList[0]:
fileindex = 2
else:
fileindex = 1
#file index is irrelevant in case of an actual 3D stack.
filename = fileList[0]
legend = os.path.basename(filename)
f = h5py.File(filename)
stack = f['Image']['data'].value
f = None
if stack is None:
raise IOError("Problem reading stack.")
object3D = ChimeraStack(name=legend)
object3D.setStack(stack)
return object3D
if __name__ == "__main__":
import sys
from Object3D import SceneGLWindow
import os
try:
from PyMca5.PyMcaIO import EDFStack
from PyMca5.PyMcaIO import EdfFile
except ImportError:
import EDFStack
import EdfFile
import getopt
options = ''
longoptions = ["fileindex=","begin=", "end="]
try:
opts, args = getopt.getopt(
sys.argv[1:],
options,
longoptions)
except:
print(sys.exc_info()[0])
sys.exit(1)
fileindex = 2
begin = None
end = None
for opt, arg in opts:
if opt in '--begin':
begin = int(arg)
elif opt in '--end':
end = int(arg)
elif opt in '--fileindex':
fileindex = int(arg)
app = qt.QApplication(sys.argv)
window = SceneGLWindow.SceneGLWindow()
window.show()
if len(sys.argv) == 1:
object3D = getObject3DInstance()
if object3D is not None:
window.addObject(object3D)
else:
filename = sys.argv[1]
if not os.path.exists(filename):
print("File does not exists")
sys.exit(1)
f = h5py.File(filename)
stack = f['Image']['data'].value
if stack is None:
raise IOError("Problem reading stack.")
object3D = ChimeraStack(name=os.path.basename(filename))
object3D.setStack(stack)
f = None
window.addObject(object3D, os.path.basename(filename))
window.setSelectedObject(os.path.basename(filename))
window.glWidget.setZoomFactor(1.0)
window.show()
app.exec_()
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