File: GenerateEADLBindingEnergies.py

package info (click to toggle)
pymca 5.8.0%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 44,392 kB
  • sloc: python: 155,456; ansic: 15,843; makefile: 116; sh: 73; xml: 55
file content (104 lines) | stat: -rw-r--r-- 4,158 bytes parent folder | download | duplicates (6)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
#/*##########################################################################
#
# The PyMca X-Ray Fluorescence Toolkit
#
# Copyright (c) 2004-2015 European Synchrotron Radiation Facility
#
# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
# the ESRF by the Software group.
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
#
#############################################################################*/
__author__ = "V.A. Sole - ESRF Data Analysis"
__contact__ = "sole@esrf.fr"
__license__ = "MIT"
__copyright__ = "European Synchrotron Radiation Facility, Grenoble, France"
__doc__= "Generate specfile with EADL97 binding energies in keV"
import os
import sys
import EADLParser

Elements = ['H', 'He',
            'Li', 'Be', 'B', 'C', 'N', 'O', 'F', 'Ne',
            'Na', 'Mg', 'Al', 'Si', 'P', 'S', 'Cl', 'Ar',
            'K', 'Ca', 'Sc', 'Ti', 'V', 'Cr', 'Mn', 'Fe',
            'Co', 'Ni', 'Cu', 'Zn', 'Ga', 'Ge', 'As', 'Se',
            'Br', 'Kr', 'Rb', 'Sr', 'Y', 'Zr', 'Nb', 'Mo',
            'Tc', 'Ru', 'Rh', 'Pd', 'Ag', 'Cd', 'In', 'Sn',
            'Sb', 'Te', 'I', 'Xe', 'Cs', 'Ba', 'La', 'Ce',
            'Pr', 'Nd', 'Pm', 'Sm', 'Eu', 'Gd', 'Tb', 'Dy',
            'Ho', 'Er', 'Tm', 'Yb', 'Lu', 'Hf', 'Ta', 'W',
            'Re', 'Os', 'Ir', 'Pt', 'Au', 'Hg', 'Tl', 'Pb',
            'Bi', 'Po', 'At', 'Rn', 'Fr', 'Ra', 'Ac', 'Th',
            'Pa', 'U', 'Np', 'Pu', 'Am', 'Cm', 'Bk', 'Cf',
            'Es', 'Fm', 'Md', 'No', 'Lr', 'Rf', 'Db', 'Sg',
            'Bh', 'Hs', 'Mt']

def getHeader(filename):
    text  = '#F %s\n' % filename
    text += '#U00 This file is a conversion to specfile format of \n'
    text += '#U01 directly extracted EADL97 Binding energies.\n'
    text += '#U02 EADL itself can be found at:\n'
    text += '#U03           http://www-nds.iaea.org/epdl97/libsall.htm\n'
    text += '#U04 The code used to generate this file has been:\n'
    text += '#U05 %s\n' % os.path.basename(__file__)
    text += '#U06\n'
    text += '\n'
    return text

if __name__ == "__main__":
    if len(sys.argv) > 1:
        fname = sys.argv[1]
    else:
        fname = "EADL97_BindingEnergies.dat"

    if os.path.exists(fname):
        os.remove(fname)

    outfile = open(fname, 'wb')
    outfile.write(getHeader(fname))


    shells = EADLParser.getBaseShellList()
    LONG_LABEL = True
    for i in range(1,101):
        print(i, Elements[i-1])
        if i == 1:
            text  = '#S 1 Binding energies in keV\n'
            label_text = ""
            n = 0
            for label in shells:
                if LONG_LABEL:
                    label_text += "  "+label.replace(' ','')
                else:
                    label_text += '  %s' % label.replace(' ','').split("(")[0]
                n += 1
            text += '#N %d\n' % n
            text += '#L Z' + label_text
            text += '\n'
            outfile.write(text)
        text = "%d" % i
        ddict = EADLParser.getBindingEnergies(i)
        for shell in shells:
            text += '  %.7E' % (ddict[shell] * 1000.)
        text += '\n'
        outfile.write(text)
    outfile.write("\n")
    outfile.close()