1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
|
# This example shows how to make a single mutation using a script
# note that no conformational analysis is done to insure
# that the resulting pose is at all reasonable.
# load a structure
load $PYMOL_PATH/test/dat/pept.pdb
# activate the mutagensis wizard
wizard mutagenesis
# set target residue type
cmd.get_wizard().set_mode("ILE")
# pick a residue
cmd.edit("pept///10/ca")
# notify the wizard about the picked residue
# (this will generate the mutation object)
cmd.get_wizard().do_pick(0)
# apply the mutation
# (this will delete the old residue,
# substitue the new one, and form
# the peptide bonds)
cmd.get_wizard().apply()
# now close the wizard
cmd.set_wizard()
|
