1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
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PyMOL>ATOM 1 N GLY A 252 39.368 46.327 27.875 1.00 46.28 N \
PyMOL>ATOM 2 CA GLY A 252 39.565 46.477 29.344 1.00 46.89 C \
PyMOL>ATOM 3 C GLY A 252 40.602 45.521 29.907 1.00 48.55 C \
PyMOL>ATOM 4 O GLY A 252 40.907 44.497 29.293 1.00 46.16 O \
PyMOL>ATOM 5 N SER A 253 41.144 45.862 31.078 1.00 45.72 N \
PyMOL>ATOM 6 CA SER A 253 42.152 45.043 31.757 1.00 46.42 C \
PyMOL>ATOM 7 C SER A 253 41.824 44.945 33.254 1.00 47.72 C \
PyMOL>ATOM 8 O SER A 253 41.053 45.756 33.778 1.00 46.62 O \
PyMOL>ATOM 9 CB SER A 253 43.543 45.667 31.587 1.00 45.55 C \
PyMOL>HEADER STEP\
PyMOL>ATOM 1 N SER E 258 55.863 54.272 24.437 1.00 37.51 N \
PyMOL>ATOM 2 CA SER E 258 56.590 54.677 23.240 1.00 36.33 C \
PyMOL>ATOM 3 C SER E 258 58.022 54.180 23.260 1.00 35.14 C \
PyMOL>ATOM 4 O SER E 258 58.647 54.090 24.306 1.00 34.89 O \
PyMOL>ATOM 5 CB SER E 258 56.566 56.199 23.083 1.00 35.95 C \
PyMOL>ATOM 6 OG SER E 258 57.340 56.607 21.975 1.00 36.25 O \
PyMOL>ATOM 7 N ARG E 259 58.546 53.842 22.088 1.00 34.24 N """
PyMOL>cmd.read_pdbstr(pdbstr,"test")
PyMOL>print cmd.get_names()
['PTPBR7', 'STEP']
PyMOL>count_atoms
count_atoms: 16 atoms
PyMOL>reinit
PyMOL>cmd.read_pdbstr("""\
PyMOL>HEADER OXIDOREDUCTASE 13-JUL-94 3MDD 3MDD 2\
PyMOL>ATOM 1 N GLY A 11 22.422 32.842 -15.744 1.00 24.74 3MDD 172\
PyMOL>ATOM 2 CA GLY A 11 21.837 32.022 -14.672 1.00 24.52 3MDD 173\
PyMOL>ATOM 3 C GLY A 11 21.575 30.609 -15.194 1.00 24.62 3MDD 174\
PyMOL>ATOM 4 O GLY A 11 22.036 30.238 -16.285 1.00 24.99 3MDD 175\
PyMOL>ATOM 5 N PHE A 12 20.843 29.864 -14.390 1.00 24.29 3MDD 176\
PyMOL>ATOM 6 CA PHE A 12 20.481 28.469 -14.679 1.00 24.00 3MDD 177\
PyMOL>ATOM 7 C PHE A 12 19.514 28.397 -15.861 1.00 23.38 3MDD 178\
PyMOL>ATOM 6017 NZ LYS B 395 -4.299 -6.687 15.377 1.00 35.83 3MDD6188\
PyMOL>ATOM 6018 OXT LYS B 395 -0.899 -11.439 20.683 1.00 35.32 3MDD6189\
PyMOL>END 3MDD6517\
PyMOL>HEADER ELECTRON TRANSPORT 02-MAR-92 1MDA 1MDA 2\
PyMOL>ATOM 1 N GLU H 1 15.906 81.036 72.025 1.00 50.00 1MDA 307\
PyMOL>ATOM 2 CA GLU H 1 17.350 81.236 71.880 1.00 50.00 1MDA 308\
PyMOL>ATOM 3 C GLU H 1 17.854 81.695 70.506 1.00 50.00 1MDA 309\
PyMOL>ATOM 4 O GLU H 1 17.668 80.983 69.518 1.00 50.00 1MDA 310\
PyMOL>ATOM 5 CB GLU H 1 18.222 80.229 72.680 1.00 50.00 1MDA 311\
PyMOL>ATOM 6 CG GLU H 1 17.540 78.863 72.954 1.00 50.00 1MDA 312\
PyMOL>ATOM 7 CD GLU H 1 17.831 77.718 72.017 1.00 43.59 1MDA 313\
PyMOL>ATOM 8 OE1 GLU H 1 18.953 77.453 71.614 1.00 47.42 1MDA 314\
PyMOL>ATOM 9 OE2 GLU H 1 16.759 77.049 71.674 1.00 37.68 1MDA 315\
PyMOL>ATOM 8568 CG GLU B 105 37.556 38.617 32.271 1.00 15.99 1MDA8874\
PyMOL>ATOM 8569 CD GLU B 105 36.485 37.572 32.282 1.00 36.23 1MDA8875\
PyMOL>ATOM 8570 OE1 GLU B 105 36.488 36.782 31.231 1.00 50.00 1MDA8876\
PyMOL>ATOM 8571 OE2 GLU B 105 35.647 37.508 33.152 1.00 50.00 1MDA8877\
PyMOL>ATOM 8572 OXT GLU B 105 41.453 38.354 30.968 1.00 50.00 1MDA8878\
PyMOL>END 1MDA8924\
PyMOL>""","test")
PyMOL>print cmd.get_names()
['3MDD', '1MDA']
PyMOL>count_atoms
count_atoms: 23 atoms
PyMOL>reinit
PyMOL>cmd.read_pdbstr("""\
PyMOL>ATOM 1 N GLY A 11 22.422 32.842 -15.744 1.00 24.74 3MDD 172\
PyMOL>ATOM 2 CA GLY A 11 21.837 32.022 -14.672 1.00 24.52 3MDD 173\
PyMOL>ATOM 3 C GLY A 11 21.575 30.609 -15.194 1.00 24.62 3MDD 174\
PyMOL>ATOM 4 O GLY A 11 22.036 30.238 -16.285 1.00 24.99 3MDD 175\
PyMOL>ATOM 5 N PHE A 12 20.843 29.864 -14.390 1.00 24.29 3MDD 176\
PyMOL>ATOM 6 CA PHE A 12 20.481 28.469 -14.679 1.00 24.00 3MDD 177\
PyMOL>ATOM 7 C PHE A 12 19.514 28.397 -15.861 1.00 23.38 3MDD 178\
PyMOL>ATOM 6017 NZ LYS B 395 -4.299 -6.687 15.377 1.00 35.83 3MDD6188\
PyMOL>ATOM 6018 OXT LYS B 395 -0.899 -11.439 20.683 1.00 35.32 3MDD6189\
PyMOL>END 3MDD6517\
PyMOL>ATOM 1 N GLU H 1 15.906 81.036 72.025 1.00 50.00 1MDA 307\
PyMOL>ATOM 2 CA GLU H 1 17.350 81.236 71.880 1.00 50.00 1MDA 308\
PyMOL>ATOM 3 C GLU H 1 17.854 81.695 70.506 1.00 50.00 1MDA 309\
PyMOL>ATOM 4 O GLU H 1 17.668 80.983 69.518 1.00 50.00 1MDA 310\
PyMOL>ATOM 5 CB GLU H 1 18.222 80.229 72.680 1.00 50.00 1MDA 311\
PyMOL>ATOM 6 CG GLU H 1 17.540 78.863 72.954 1.00 50.00 1MDA 312\
PyMOL>ATOM 7 CD GLU H 1 17.831 77.718 72.017 1.00 43.59 1MDA 313\
PyMOL>ATOM 8 OE1 GLU H 1 18.953 77.453 71.614 1.00 47.42 1MDA 314\
PyMOL>ATOM 9 OE2 GLU H 1 16.759 77.049 71.674 1.00 37.68 1MDA 315\
PyMOL>ATOM 8568 CG GLU B 105 37.556 38.617 32.271 1.00 15.99 1MDA8874\
PyMOL>ATOM 8569 CD GLU B 105 36.485 37.572 32.282 1.00 36.23 1MDA8875\
PyMOL>ATOM 8570 OE1 GLU B 105 36.488 36.782 31.231 1.00 50.00 1MDA8876\
PyMOL>ATOM 8571 OE2 GLU B 105 35.647 37.508 33.152 1.00 50.00 1MDA8877\
PyMOL>ATOM 8572 OXT GLU B 105 41.453 38.354 30.968 1.00 50.00 1MDA8878\
PyMOL>END 1MDA8924\
PyMOL>""","test")
PyMOL>print cmd.get_names()
['test_0001', 'test_0002']
PyMOL>count_atoms
count_atoms: 23 atoms
PyMOL>reinit
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