1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
|
PyMOL>dele all
PyMOL>load dat/pept.pdb
CmdLoad: "dat/pept.pdb" loaded as "pept".
PyMOL>alter (elem n,o),vdw=4.0
Alter: modified 36 atoms.
PyMOL>show dots
PyMOL>ray
RayRenderTest: obtained 2032 graphics primitives.
PyMOL>alter_state 1,(all),x=x+y
AlterState: modified 107 atom coordinate states.
PyMOL>hide
PyMOL>show lines
PyMOL>ray
RayRenderTest: obtained 166 graphics primitives.
PyMOL>dele all
PyMOL>load dat/pept.pdb
CmdLoad: "dat/pept.pdb" loaded as "pept".
PyMOL>load dat/pept.pdb
CmdLoad: "dat/pept.pdb" appended into object "pept", state 2.
PyMOL>alter_state -1,(all),x=x+y
AlterState: modified 107 atom coordinate states.
PyMOL>alter_state 0,(all), x=x+y
AlterState: modified 214 atom coordinate states.
PyMOL>alter_state 1,(all), x=x+y
AlterState: modified 107 atom coordinate states.
PyMOL>alter_state 2,(all), x=x+y
AlterState: modified 107 atom coordinate states.
PyMOL>alter_state 3,(all), x=x+y
AlterState: modified 0 atom coordinate states.
PyMOL>dele all
PyMOL>load dat/small01.mol
ExecutiveLoad: "dat/small01.mol" loaded as "small01", through state 1.
PyMOL>remove hydro
Remove: eliminated 20 atoms in model "small01".
PyMOL>h_add
PyMOL>count_atoms
count_atoms: 36 atoms
PyMOL>dele all
PyMOL>load dat/small01.mol
ExecutiveLoad: "dat/small01.mol" loaded as "small01", through state 1.
PyMOL>dele all
PyMOL>load dat/small01.mol
ExecutiveLoad: "dat/small01.mol" loaded as "small01", through state 1.
PyMOL>remove id 17
Remove: eliminated 1 atoms in model "small01".
PyMOL>count_atoms
count_atoms: 35 atoms
PyMOL>edit id 3
Selector: selection "pk1" defined with 1 atoms.
PyMOL>attach X,4,2
PyMOL>count_atoms
count_atoms: 36 atoms
PyMOL>edit elem X
Selector: selection "pk1" defined with 1 atoms.
PyMOL>remove_picked
Remove: eliminated 1 atoms in model "small01".
PyMOL>unpick
PyMOL>print cmd.get_names()
['small01']
PyMOL>count_atoms
count_atoms: 35 atoms
PyMOL>h_add
PyMOL>count_atoms
count_atoms: 36 atoms
PyMOL>dele all
PyMOL>load dat/small01.mol
ExecutiveLoad: "dat/small01.mol" loaded as "small01", through state 1.
PyMOL>unbond id 1,id 2
Unbond: 1 bonds removed from model "small01".
PyMOL>h_add
PyMOL>count_atoms
count_atoms: 38 atoms
PyMOL>remove hydro
Remove: eliminated 22 atoms in model "small01".
PyMOL>bond id 1,id 2
Bond: 1 bonds added to model "small01".
PyMOL>h_add
PyMOL>count_atoms
count_atoms: 36 atoms
PyMOL>dele all
PyMOL>load dat/small01.mol
ExecutiveLoad: "dat/small01.mol" loaded as "small01", through state 1.
PyMOL>edit id 6,id 10
Selector: selection "pk1" defined with 1 atoms.
Selector: selection "pk2" defined with 1 atoms.
PyMOL>cycle_valence
Remove: eliminated 2 atoms in model "small01".
Remove: eliminated 2 atoms in model "small01".
PyMOL>count_atoms
count_atoms: 34 atoms
PyMOL>cycle_valence
Remove: eliminated 1 atoms in model "small01".
Remove: eliminated 1 atoms in model "small01".
PyMOL>count_atoms
count_atoms: 32 atoms
PyMOL>remove_picked
PyMOL>bond id 6,id 10,2
Bond: 1 bonds added to model "small01".
PyMOL>h_add
PyMOL>set valence=0.05
Setting: valence set to on.
PyMOL>ray
RayRenderTest: obtained 59 graphics primitives.
PyMOL>dele all
PyMOL>load dat/pept.pdb
CmdLoad: "dat/pept.pdb" loaded as "pept".
PyMOL>get_extent
cmd.extent: min: [ -5.188, -20.331, 13.157]
cmd.extent: max: [ 8.919, 0.863, 27.058]
PyMOL>protect resi 1-6
Protect: 51 atoms protected from movement.
PyMOL>edit 2/sg,12/sg
Selector: selection "pk1" defined with 1 atoms.
Selector: selection "pk2" defined with 1 atoms.
PyMOL>torsion 90
PyMOL>get_extent
cmd.extent: min: [ -10.445, -22.170, 11.965]
cmd.extent: max: [ 6.787, 0.863, 27.058]
PyMOL>undo
PyMOL>get_extent
cmd.extent: min: [ -5.188, -20.331, 13.157]
cmd.extent: max: [ 8.919, 0.863, 27.058]
PyMOL>redo
PyMOL>get_extent
cmd.extent: min: [ -10.445, -22.170, 11.965]
cmd.extent: max: [ 6.787, 0.863, 27.058]
PyMOL>undo
PyMOL>get_extent
cmd.extent: min: [ -5.188, -20.331, 13.157]
cmd.extent: max: [ 8.919, 0.863, 27.058]
PyMOL>deprotect
Protect: 107 atoms deprotected.
PyMOL>edit 2/sg,12/sg
Selector: selection "pk1" defined with 1 atoms.
Selector: selection "pk2" defined with 1 atoms.
PyMOL>torsion 90
PyMOL>get_extent
cmd.extent: min: [ -15.562, -22.170, 11.965]
cmd.extent: max: [ 5.893, -8.073, 25.808]
PyMOL>dele all
PyMOL>load dat/pept.pdb
CmdLoad: "dat/pept.pdb" loaded as "pept".
PyMOL>flag ignore,(!*/ca,c,n,o,cb)
Flag: flag 25 is set in 43 of 107 atoms.
PyMOL>flag exfoliate,(*/cb)
Flag: flag 24 is set in 12 of 107 atoms.
PyMOL>show surf
PyMOL>ray
RepSurface: 921 surface points.
RepSurface: 1838 triangles.
RayRenderTest: obtained 1529 graphics primitives.
PyMOL>dele all
PyMOL>load dat/small01.mol,m1
ExecutiveLoad: "dat/small01.mol" loaded as "m1", through state 1.
PyMOL>load dat/small01.mol,m2
ExecutiveLoad: "dat/small01.mol" loaded as "m2", through state 1.
PyMOL>fuse m1 and id 31,m2 and id 31
PyMOL>dele m1
PyMOL>zoom
PyMOL>ray
RayRenderTest: obtained 144 graphics primitives.
PyMOL>dele all
PyMOL>load dat/small01.mol,m1
ExecutiveLoad: "dat/small01.mol" loaded as "m1", through state 1.
PyMOL>load dat/small01.mol,m2
ExecutiveLoad: "dat/small01.mol" loaded as "m2", through state 1.
PyMOL>remove id 30
Remove: eliminated 1 atoms in model "m1".
Remove: eliminated 1 atoms in model "m2".
PyMOL>fuse m1 and id 12,m2 and id 12
PyMOL>dele m1
PyMOL>zoom
PyMOL>ray
RayRenderTest: obtained 144 graphics primitives.
PyMOL>dele all
PyMOL>load dat/small01.mol
ExecutiveLoad: "dat/small01.mol" loaded as "small01", through state 1.
PyMOL>edit id 2,id 6, id 5
Selector: selection "pk1" defined with 1 atoms.
Selector: selection "pk2" defined with 1 atoms.
Selector: selection "pk3" defined with 1 atoms.
PyMOL>invert
Editor: Inverted atom.
PyMOL>print "%8.3f"%cmd.dist("id 28","id 17")
1.957
PyMOL>dele all
PyMOL>load dat/pept.pdb
CmdLoad: "dat/pept.pdb" loaded as "pept".
PyMOL>iterate (name n),print resi
1
2
3
4
5
6
7
8
9
10
11
12
13
Iterate: iterated over 13 atoms.
PyMOL>iterate_state 1,(name o),print "%8.3f %8.3f %8.3f"%(x,y,z)
4.456 -15.889 23.517
3.025 -12.039 25.188
1.332 -9.867 21.362
0.752 -5.592 23.297
-2.092 -3.870 19.914
-5.181 -3.100 20.933
-5.188 -7.669 21.049
-1.643 -7.529 19.691
-0.699 -9.660 16.692
2.708 -11.019 16.296
3.449 -13.097 20.534
5.278 -17.322 18.998
5.962 -19.432 22.570
IterateState: iterated over 13 atom coordinate states.
PyMOL>dele all
PyMOL>load dat/il2.pdb
CmdLoad: "dat/il2.pdb" loaded as "il2".
PyMOL>stored.sum = 0
PyMOL>iterate_state 1,(il2),stored.sum=stored.sum+x
IterateState: iterated over 2084 atom coordinate states.
PyMOL>print "%8.3f"%stored.sum
20809.421
PyMOL>push_undo (il2)
PyMOL>alter_state 1,(il2),x=0.0
AlterState: modified 2084 atom coordinate states.
PyMOL>rebuild
PyMOL>stored.sum = 0
PyMOL>iterate_state 1,(il2),stored.sum=stored.sum+x
IterateState: iterated over 2084 atom coordinate states.
PyMOL>print "%8.3f"%stored.sum
0.000
PyMOL>edit il2`1
Selector: selection "pk1" defined with 1 atoms.
PyMOL>undo
PyMOL>stored.sum = 0
PyMOL>iterate_state 1,(il2),stored.sum=stored.sum+x
IterateState: iterated over 2084 atom coordinate states.
PyMOL>print "%8.3f"%stored.sum
20809.421
PyMOL>rebuild
PyMOL>show dots
PyMOL>ray
RayRenderTest: obtained 111433 graphics primitives.
PyMOL>dele all
PyMOL>load dat/small01.mol
ExecutiveLoad: "dat/small01.mol" loaded as "small01", through state 1.
PyMOL>iterate (all),print name
C
C
C
C
C
C
C
C
C
C
C
C
C
C
O
O
H
H
H
H
H
H
H
H
H
H
H
H
H
H
H
H
H
H
H
H
Iterate: iterated over 36 atoms.
PyMOL>rename small01
Rename: renamed 33 atoms.
PyMOL>iterate (all),print name
C01
C02
C03
C04
C05
C06
C07
C08
C09
C10
C11
C12
C13
C
O14
O
H15
H16
H17
H18
H19
H20
H21
H22
H23
H24
H25
H26
H27
H28
H29
H30
H31
H32
H33
H
Iterate: iterated over 36 atoms.
PyMOL>dele all
PyMOL>load dat/small01.mol
ExecutiveLoad: "dat/small01.mol" loaded as "small01", through state 1.
PyMOL>edit id 3
Selector: selection "pk1" defined with 1 atoms.
PyMOL>replace N,3,3
Remove: eliminated 1 atoms in model "small01".
PyMOL>dele all
PyMOL>load dat/pept.pdb
CmdLoad: "dat/pept.pdb" loaded as "pept".
PyMOL>get_extent
cmd.extent: min: [ -5.188, -20.331, 13.157]
cmd.extent: max: [ 8.919, 0.863, 27.058]
PyMOL>origin pept,object=pept
PyMOL>rotate x,-45,object=pept
PyMOL>get_extent
cmd.extent: min: [ -5.188, -18.391, 12.126]
cmd.extent: max: [ 8.919, -1.236, 29.153]
PyMOL>reset
PyMOL>get_extent
cmd.extent: min: [ -5.188, -18.391, 12.126]
cmd.extent: max: [ 8.919, -1.236, 29.153]
PyMOL>rotate x,45,pept
PyMOL>get_extent
cmd.extent: min: [ -5.188, -20.331, 13.157]
cmd.extent: max: [ 8.919, 0.863, 27.058]
PyMOL>dele all
PyMOL>load dat/pept.pdb
CmdLoad: "dat/pept.pdb" loaded as "pept".
PyMOL>get_dihedral 1/n,1/ca,1/c,1/o
cmd.get_dihedral: -8.586 degrees.
PyMOL>get_extent
cmd.extent: min: [ -5.188, -20.331, 13.157]
cmd.extent: max: [ 8.919, 0.863, 27.058]
PyMOL>set_dihedral 1/n,1/ca,1/c,1/o,180
SetDihedral: adjusted to 180.000
PyMOL>get_dihedral 1/n,1/ca,1/c,1/o
cmd.get_dihedral: 180.000 degrees.
PyMOL>get_extent
cmd.extent: min: [ -1.282, -17.809, 6.314]
cmd.extent: max: [ 10.270, -4.939, 29.070]
PyMOL>dele all
PyMOL>load dat/small01.mol
ExecutiveLoad: "dat/small01.mol" loaded as "small01", through state 1.
PyMOL>remove not id 3
Remove: eliminated 35 atoms in model "small01".
PyMOL>zoom
PyMOL>count_atoms
count_atoms: 1 atoms
PyMOL>set_geometry (id 3),4,4
PyMOL>h_add
PyMOL>count_atoms
count_atoms: 5 atoms
PyMOL>remove hydro
Remove: eliminated 4 atoms in model "small01".
PyMOL>set_geometry (id 3),3,3
PyMOL>h_add
PyMOL>count_atoms
count_atoms: 4 atoms
PyMOL>remove hydro
Remove: eliminated 3 atoms in model "small01".
PyMOL>set_geometry (id 3),2,2
PyMOL>h_add
PyMOL>count_atoms
count_atoms: 3 atoms
PyMOL>remove hydro
Remove: eliminated 2 atoms in model "small01".
PyMOL>set_geometry (id 3),4,2
PyMOL>h_add
PyMOL>count_atoms
count_atoms: 3 atoms
PyMOL>dele all
PyMOL>load dat/pept.pdb
CmdLoad: "dat/pept.pdb" loaded as "pept".
PyMOL>alter (all),resi = (999-int(resi)-ID/4)
Alter: modified 107 atoms.
PyMOL>sort
PyMOL>show sph,(byres id 10)
PyMOL>ray
RayRenderTest: obtained 210 graphics primitives.
PyMOL>dele all
PyMOL>dele all
PyMOL>load dat/pept.pdb
CmdLoad: "dat/pept.pdb" loaded as "pept".
PyMOL>get_extent
cmd.extent: min: [ -5.188, -20.331, 13.157]
cmd.extent: max: [ 8.919, 0.863, 27.058]
PyMOL>cmd.edit("(pept`95)",pkresi=1)
PyMOL>cmd.push_undo("pept",1)
PyMOL>cmd.edit("(pept`10)",pkresi=1)
PyMOL>cmd.push_undo("pept",1)
PyMOL>get_extent
cmd.extent: min: [ -5.124, -31.391, 12.760]
cmd.extent: max: [ 8.919, -12.759, 27.469]
PyMOL>dele all
PyMOL>load dat/small01.mol
ExecutiveLoad: "dat/small01.mol" loaded as "small01", through state 1.
PyMOL>cmd.edit("(small01`3)",pkresi=1)
PyMOL>cmd.edit_mode()
PyMOL>cmd.push_undo("small01",1)
PyMOL>get_extent
cmd.extent: min: [ -15.344, -2.159, -3.683]
cmd.extent: max: [ -3.585, 2.683, 3.171]
PyMOL>undo
PyMOL>get_extent
cmd.extent: min: [ -8.369, -2.595, -4.337]
cmd.extent: max: [ 2.256, 2.247, 2.517]
PyMOL>dele all
PyMOL>load dat/small01.mol
ExecutiveLoad: "dat/small01.mol" loaded as "small01", through state 1.
PyMOL>get_extent
cmd.extent: min: [ -8.369, -2.595, -4.337]
cmd.extent: max: [ 2.256, 2.247, 2.517]
PyMOL>cmd.set('valence','0.0500')
PyMOL>cmd.edit_mode()
PyMOL>cmd.push_undo("small01",1)
PyMOL>cmd.translate_atom("/small01////C`", 0.020101367, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.040202733, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.020101367, -0.040202733, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.040202733, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.060304098, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.020101367, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.020101367, -0.040202733, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.020101367, -0.040202733, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.040202733, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.040202733, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.020101367, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.160810933, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.040202733, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.160810933, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.040202733, -0.120608196, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.040202755, -0.160811022, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.060304098, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.040202733, -0.120608196, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.040202755, -0.160811022, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.160810933, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.040202733, -0.160810933, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.060304098, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.160810933, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.060304098, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.040202733, -0.160810933, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.060304098, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.040202733, -0.120608196, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.040202733, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.060304098, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.020101367, -0.020101367, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.040202733, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.060304098, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.060304098, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.040202733, -0.160810933, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.160810933, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.040202733, -0.160810933, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.040202733, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.000000000, -0.040202733, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", -0.020101367, 0.000000000, 0.000000000,1,1,0)
PyMOL>cmd.translate_atom("/small01////C`", 0.020101367, 0.000000000, 0.000000000,1,1,0)
PyMOL>get_extent
cmd.extent: min: [ -8.369, -3.896, -4.337]
cmd.extent: max: [ 2.256, 2.247, 2.517]
PyMOL>undo
PyMOL>get_extent
cmd.extent: min: [ -8.369, -2.595, -4.337]
cmd.extent: max: [ 2.256, 2.247, 2.517]
PyMOL>dele all
PyMOL>load dat/pept.pdb
CmdLoad: "dat/pept.pdb" loaded as "pept".
PyMOL>get_extent
cmd.extent: min: [ -5.188, -20.331, 13.157]
cmd.extent: max: [ 8.919, 0.863, 27.058]
PyMOL>load dat/pept.pdb,sav
CmdLoad: "dat/pept.pdb" loaded as "sav".
PyMOL>alter_state 1,(pept),x=1;y=2;z=3;
AlterState: modified 107 atom coordinate states.
PyMOL>rebuild
PyMOL>get_extent pept
cmd.extent: min: [ 1.000, 2.000, 3.000]
cmd.extent: max: [ 1.000, 2.000, 3.000]
PyMOL>update pept,sav
Update: coordinates updated for 107 atoms.
PyMOL>get_extent pept
cmd.extent: min: [ -5.188, -20.331, 13.157]
cmd.extent: max: [ 8.919, 0.863, 27.058]
|
