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PyMOL>load dat/pept.pdb,prot
CmdLoad: "dat/pept.pdb" loaded as "prot".
PyMOL>map_new map1,gaussian,1.0,state=-3
ObjectMap: Map created.
ObjectMap: Computing Gaussian map for 107 atom positions.
ObjectMap: Normalizing: mean = 0.079928 & stdev = 0.237612.
Executive: object "map1" created.
PyMOL>translate [10,20,30], object=prot, object_mode=1
PyMOL>rotate x,30,prot,object=prot,object_mode=1
PyMOL>rotate y,30,prot,object=prot,object_mode=1
PyMOL>rotate z,30,prot,object=prot,object_mode=1
PyMOL>zoom prot
PyMOL>dump44(cmd.get_object_matrix("map1"))
[ 1.00 0.00 0.00 0.00
0.00 1.00 0.00 0.00
0.00 0.00 1.00 0.00
0.00 0.00 0.00 1.00 ]
PyMOL>matrix_transfer prot, map1
PyMOL>dump44(cmd.get_object_matrix("map1"))
[ 0.75 -0.22 0.62 7.79
0.43 0.88 -0.22 17.71
-0.50 0.43 0.75 36.18
0.00 0.00 0.00 1.00 ]
PyMOL>isomesh m1, map1, 1.0, 5/, carve=2.1
Executive: object "m1" created.
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 464 graphics primitives.
PyMOL>isosurf s1, map1, 1.0, 5/, carve=2.1
Executive: object "s1" created.
Isosurface: created "s1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "s1".
RayRenderTest: obtained 1284 graphics primitives.
PyMOL>translate [5,-10,2], object=prot, object_mode=1
PyMOL>rotate x,60,prot,object=prot,object_mode=1
PyMOL>rotate z,20,prot,object=prot,object_mode=1
PyMOL>rotate y,30,prot,object=prot,object_mode=1
PyMOL>matrix_transfer prot, map1
PyMOL>isomesh m1, map1, 1.0, 5/, carve=3
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 1404 graphics primitives.
PyMOL>disable
PyMOL>isosurf s1, map1, 1.0, 5/, carve=3
Isosurface: created "s1", setting level to 1.000
PyMOL>ray renderer=2
RayRenderTest: obtained 0 graphics primitives.
PyMOL>disable
PyMOL>isomesh m2, map1, 1.0, 5/, 3
Executive: object "m2" created.
Isomesh: created "m2", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m2".
RayRenderTest: obtained 1468 graphics primitives.
PyMOL>disable
PyMOL>isosurf s2, map1, 1.0, 5/, 3
Executive: object "s2" created.
Isosurface: created "s2", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "s2".
RayRenderTest: obtained 4096 graphics primitives.
PyMOL>disable
PyMOL>isomesh m3, map1
Executive: object "m3" created.
Isomesh: created "m3", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m3".
RayRenderTest: obtained 2908 graphics primitives.
PyMOL>disable
PyMOL>isosurf s3, map1
Executive: object "s3" created.
Isosurface: created "s3", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "s3".
RayRenderTest: obtained 8492 graphics primitives.
PyMOL>enable
PyMOL>ray renderer=2
ObjectSurface: updating "s1".
RayRenderTest: obtained 18753 graphics primitives.
PyMOL>save tmp/C1200.pse
Save: wrote "tmp/C1200.pse".
PyMOL>reinit
PyMOL>load tmp/C1200.pse
Executive: Loading version 1.20 session...
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
ObjectSurface: updating "s1".
ObjectMesh: updating "m2".
ObjectSurface: updating "s2".
ObjectMesh: updating "m3".
ObjectSurface: updating "s3".
RayRenderTest: obtained 18753 graphics primitives.
PyMOL>disable
PyMOL>isomesh m4, map1, 2.0, 2/, 4
Executive: object "m4" created.
Isomesh: created "m4", setting level to 2.000
PyMOL>isosurf s4, map1, 2.0, 2/, 4
Executive: object "s4" created.
Isosurface: created "s4", setting level to 2.000
PyMOL>ray renderer=2
ObjectMesh: updating "m4".
ObjectSurface: updating "s4".
RayRenderTest: obtained 6533 graphics primitives.
PyMOL>disable
PyMOL>enable m1
PyMOL>isolevel m1, 3
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 288 graphics primitives.
PyMOL>disable
PyMOL>enable s1
PyMOL>isolevel s1, 5
PyMOL>ray renderer=2
ObjectSurface: updating "s1".
RayRenderTest: obtained 168 graphics primitives.
PyMOL>print "END-LOG"
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