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PyMOL>from pymol2 import PyMOL
PyMOL>lst = []
PyMOL>for i in range(0,3): lst.append( PyMOL() )
PyMOL>for pi in lst: print pi.__class__
pymol2.PyMOL
pymol2.PyMOL
pymol2.PyMOL
PyMOL>for pi in lst: pi.start()
PyMOL>load dat/helix_amber.pdb
CmdLoad: "dat/helix_amber.pdb" loaded as "helix_amber".
PyMOL>lst[0].cmd.do("load dat/pept.pdb")
PyMOL>load dat/pept.pdb
CmdLoad: "dat/pept.pdb" loaded as "pept".
PyMOL>lst[1].cmd.do("load dat/3al1.pdb")
PyMOL>load dat/3al1.pdb
HEADER STRUCTURAL PROTEIN 26-OCT-98 3AL1
TITLE DESIGNED PEPTIDE ALPHA-1, RACEMIC P1BAR FORM
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: D, L-ALPHA-1;
COMPND 3 CHAIN: A, B;
COMPND 4 ENGINEERED: YES;
COMPND 5 OTHER_DETAILS: N TERMINI ARE ACETYLATED
ObjectMolecule: Read secondary structure assignments.
ObjectMolecule: Read crystal symmetry information.
Symmetry: Found 2 symmetry operators.
CmdLoad: "dat/3al1.pdb" loaded as "3al1".
PyMOL>lst[2].cmd.do("load dat/1tii.pdb")
PyMOL>load dat/1tii.pdb
HEADER ENTEROTOXIN 20-MAR-96 1TII
TITLE ESCHERICHIA COLI HEAT LABILE ENTEROTOXIN TYPE IIB
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HEAT LABILE ENTEROTOXIN TYPE IIB;
COMPND 3 CHAIN: D, E, F, G, H, A, C;
COMPND 4 SYNONYM: LT-IIB;
COMPND 5 ENGINEERED: YES;
COMPND 6 OTHER_DETAILS: LATENT/INACTIVE FORM
ObjectMolecule: Read secondary structure assignments.
ObjectMolecule: Read crystal symmetry information.
Symmetry: Found 6 symmetry operators.
CmdLoad: "dat/1tii.pdb" loaded as "1tii".
PyMOL>python
1:open("tmp/M0041a.pml",'w').write('''
2:
3:print __script__
4:count_atoms
5:
6:''')
PyMOL>python end
PyMOL>@tmp/M0041a.pml
PyMOL>print __script__
tmp/M0041a.pml
PyMOL>count_atoms
count_atoms: 392 atoms
PyMOL>lst[0].cmd.do("@tmp/M0041a.pml")
PyMOL>@tmp/M0041a.pml
PyMOL>print __script__
tmp/M0041a.pml
PyMOL>count_atoms
count_atoms: 107 atoms
PyMOL>lst[1].cmd.do("@tmp/M0041a.pml")
PyMOL>@tmp/M0041a.pml
PyMOL>print __script__
tmp/M0041a.pml
PyMOL>count_atoms
count_atoms: 679 atoms
PyMOL>lst[2].cmd.do("@tmp/M0041a.pml")
PyMOL>@tmp/M0041a.pml
PyMOL>print __script__
tmp/M0041a.pml
PyMOL>count_atoms
count_atoms: 5684 atoms
PyMOL>for pi in lst: pi.stop()
PyMOL>del lst
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