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PyMOL>from pymol2 import PyMOL
PyMOL>lst = []
PyMOL>for i in range(0,3): lst.append( PyMOL() )
PyMOL>for pi in lst: pi.start()
PyMOL>cmd.load("dat/1tii.pdb",quiet=0)
HEADER ENTEROTOXIN 20-MAR-96 1TII
TITLE ESCHERICHIA COLI HEAT LABILE ENTEROTOXIN TYPE IIB
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HEAT LABILE ENTEROTOXIN TYPE IIB;
COMPND 3 CHAIN: D, E, F, G, H, A, C;
COMPND 4 SYNONYM: LT-IIB;
COMPND 5 ENGINEERED: YES;
COMPND 6 OTHER_DETAILS: LATENT/INACTIVE FORM
ObjectMolecule: Read secondary structure assignments.
ObjectMolecule: Read crystal symmetry information.
Symmetry: Found 6 symmetry operators.
CmdLoad: "dat/1tii.pdb" loaded as "1tii".
PyMOL>lst[0].cmd.load("dat/pept.pdb",quiet=0)
CmdLoad: "dat/pept.pdb" loaded as "pept".
PyMOL>lst[1].cmd.load("dat/3al1.pdb",quiet=0)
HEADER STRUCTURAL PROTEIN 26-OCT-98 3AL1
TITLE DESIGNED PEPTIDE ALPHA-1, RACEMIC P1BAR FORM
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: D, L-ALPHA-1;
COMPND 3 CHAIN: A, B;
COMPND 4 ENGINEERED: YES;
COMPND 5 OTHER_DETAILS: N TERMINI ARE ACETYLATED
ObjectMolecule: Read secondary structure assignments.
ObjectMolecule: Read crystal symmetry information.
Symmetry: Found 2 symmetry operators.
CmdLoad: "dat/3al1.pdb" loaded as "3al1".
PyMOL>print cmd.count_atoms()
5684
PyMOL>for pi in lst: print pi.cmd.count_atoms()
107
679
0
PyMOL>cmd._dump_floats(lst[0].cmd.get_view())
1.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 1.000
0.000 0.000 -63.191 1.224 -10.279 20.545 49.820 76.561 0.000
PyMOL>lst[0].cmd.ray(renderer=2)
RayRenderTest: obtained 166 graphics primitives.
PyMOL>lst[0].cmd.scene("F1","store")
scene: scene stored as "F1".
PyMOL>lst[0].cmd.turn("x",45)
PyMOL>cmd._dump_floats(lst[0].cmd.get_view())
1.000 0.000 0.000 0.000 0.707 0.707 0.000 -0.707 0.707
0.000 0.000 -63.191 1.224 -10.279 20.545 49.820 76.561 0.000
PyMOL>lst[0].cmd.show_as("cartoon")
PyMOL>lst[0].cmd.ray(renderer=2)
RayRenderTest: obtained 800 graphics primitives.
PyMOL>lst[0].cmd.scene("F2","store")
scene: scene stored as "F2".
PyMOL>cmd._dump_floats(lst[1].cmd.get_view())
1.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 1.000
0.000 0.000 -100.481 -9.632 2.772 -6.069 79.220 121.742 0.000
PyMOL>lst[1].cmd.ray(renderer=2)
RayRenderTest: obtained 1266 graphics primitives.
PyMOL>lst[1].cmd.scene("F1","store")
scene: scene stored as "F1".
PyMOL>lst[1].cmd.turn("y",45)
PyMOL>cmd._dump_floats(lst[1].cmd.get_view())
0.707 0.000 -0.707 0.000 1.000 0.000 0.707 0.000 0.707
0.000 0.000 -100.481 -9.632 2.772 -6.069 79.220 121.742 0.000
PyMOL>lst[1].cmd.show_as("cartoon")
PyMOL>lst[1].cmd.ray(renderer=2)
RayRenderTest: obtained 2832 graphics primitives.
PyMOL>lst[1].cmd.scene("F2","store")
scene: scene stored as "F2".
PyMOL>cmd._dump_floats(cmd.get_view())
1.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 1.000
0.000 0.000 -227.278 51.665 11.519 10.196 179.188 275.368 0.000
PyMOL>for pi in lst: cmd._dump_floats(pi.cmd.get_view())
1.000 0.000 0.000 0.000 0.707 0.707 0.000 -0.707 0.707
0.000 0.000 -63.191 1.224 -10.279 20.545 49.820 76.561 0.000
0.707 0.000 -0.707 0.000 1.000 0.000 0.707 0.000 0.707
0.000 0.000 -100.481 -9.632 2.772 -6.069 79.220 121.742 0.000
1.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 1.000
0.000 0.000 -50.000 0.000 0.000 0.000 40.000 100.000 0.000
PyMOL>lst[0].cmd.hide("everything")
PyMOL>lst[1].cmd.hide("everything")
PyMOL>lst[0].cmd.save("tmp/M0052sess0.pse",quiet=0)
Save: wrote "tmp/M0052sess0.pse".
PyMOL>lst[1].cmd.save("tmp/M0052sess1.pse",quiet=0)
Save: wrote "tmp/M0052sess1.pse".
PyMOL>lst[0].cmd.load("tmp/M0052sess1.pse",quiet=0)
Executive: Loading version 1.10 session...
PyMOL>lst[1].cmd.load("tmp/M0052sess0.pse",quiet=0)
Executive: Loading version 1.10 session...
PyMOL>cmd.ray(renderer=2)
RayRenderTest: obtained 9114 graphics primitives.
PyMOL>for pi in lst: pi.cmd.ray(renderer=2)
RayRenderTest: obtained 0 graphics primitives.
RayRenderTest: obtained 0 graphics primitives.
RayRenderTest: obtained 0 graphics primitives.
PyMOL>print cmd.count_atoms()
5684
PyMOL>or pi in lst: print pi.cmd.count_atoms()
Error: ambiguous command:
order orient origin
PyMOL>cmd._dump_floats(cmd.get_view())
1.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 1.000
0.000 0.000 -227.278 51.665 11.519 10.196 179.188 275.368 0.000
PyMOL>for pi in lst: cmd._dump_floats(pi.cmd.get_view())
0.707 0.000 -0.707 0.000 1.000 0.000 0.707 0.000 0.707
0.000 0.000 -100.481 -9.632 2.772 -6.069 79.220 121.742 0.000
1.000 0.000 0.000 0.000 0.707 0.707 0.000 -0.707 0.707
0.000 0.000 -63.191 1.224 -10.279 20.545 49.820 76.561 0.000
1.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 1.000
0.000 0.000 -50.000 0.000 0.000 0.000 40.000 100.000 0.000
PyMOL>lst[0].cmd.scene("F1",animate=0)
PyMOL>lst[1].cmd.scene("F1",animate=0)
PyMOL>cmd._dump_floats(cmd.get_view())
1.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 1.000
0.000 0.000 -227.278 51.665 11.519 10.196 179.188 275.368 0.000
PyMOL>for pi in lst: cmd._dump_floats(pi.cmd.get_view())
1.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 1.000
0.000 0.000 -100.481 -9.632 2.772 -6.069 79.220 121.742 0.000
1.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 1.000
0.000 0.000 -63.191 1.224 -10.279 20.545 49.820 76.561 0.000
1.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 1.000
0.000 0.000 -50.000 0.000 0.000 0.000 40.000 100.000 0.000
PyMOL>cmd.ray(renderer=2)
RayRenderTest: obtained 9114 graphics primitives.
PyMOL>for pi in lst: pi.cmd.ray(renderer=2)
RayRenderTest: obtained 1266 graphics primitives.
RayRenderTest: obtained 166 graphics primitives.
RayRenderTest: obtained 0 graphics primitives.
PyMOL>lst[0].cmd.scene("F2",animate=0)
PyMOL>lst[1].cmd.scene("F2",animate=0)
PyMOL>cmd._dump_floats(cmd.get_view())
1.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 1.000
0.000 0.000 -227.278 51.665 11.519 10.196 179.188 275.368 0.000
PyMOL>for pi in lst: cmd._dump_floats(pi.cmd.get_view())
0.707 0.000 -0.707 0.000 1.000 0.000 0.707 0.000 0.707
0.000 0.000 -100.481 -9.632 2.772 -6.069 79.220 121.742 0.000
1.000 0.000 0.000 0.000 0.707 0.707 0.000 -0.707 0.707
0.000 0.000 -63.191 1.224 -10.279 20.545 49.820 76.561 0.000
1.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000 1.000
0.000 0.000 -50.000 0.000 0.000 0.000 40.000 100.000 0.000
PyMOL>cmd.ray(renderer=2)
RayRenderTest: obtained 9114 graphics primitives.
PyMOL>for pi in lst: pi.cmd.ray(renderer=2)
RayRenderTest: obtained 2832 graphics primitives.
RayRenderTest: obtained 800 graphics primitives.
RayRenderTest: obtained 0 graphics primitives.
PyMOL>for pi in lst: pi.stop()
PyMOL>del lst
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