File: density.pml

package info (click to toggle)
pymol 1.8.4.0%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 42,248 kB
  • ctags: 24,095
  • sloc: cpp: 474,635; python: 75,034; ansic: 22,888; sh: 236; makefile: 78; csh: 21
file content (31 lines) | stat: -rw-r--r-- 436 bytes parent folder | download | duplicates (12) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
 
# alter settings for publication quality

set mesh_radius = 0.02
set antialias = 1
set stick_radius = 0.1

# load pdb and map file

load 1DN2.pdb,1dn2
load 2fofc.xplor

# display region of interest

hide
show sticks,(byres ((c;f & i;5,6) x;4))

# show e-density nearby

isomesh den, 2fofc, 1.0, (c;F & i;6), 8.0
color marine,den

# zoom in, turn, and clip

zoom (c;f & i;5,6),2
turn x,10
turn y,-10
clip slab, 6.5

ray
png density.png