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from pymol import m4x
# quash output
#feedback disable, all, everything
# assign secondary structure (if not already assigned)
dss preserve=1
# hide selection indicators
deselect
# customize settings
set sphere_scale, 0.25
set stick_radius, 0.15
set dot_width, 1.5
# hide default representations
hide lines
hide nonbonded
# show overall proteins as CA-trace
show ribbon, m4x_aligned
set ribbon_sampling, 1
# hide other stuff
hide dashes
hide labels
# disable color blending on cartoon
#set cartoon_discrete_colors,1
# don't smooth loops and sheets -- lets use the real coordinates
#set cartoon_smooth_loops, 0
#set cartoon_flat_sheets, 0
# show valencies
set valence,1
set stick_ball,1
# orient entire system along principal axes
orient m4x_aligned
# get context information
context_info=m4x.get_context_info()
# setup the contexts
m4x.setup_alignment_contexts(context_info)
# set Ctrl Q to Quit
_ cmd.set_key('CTRL-Q',cmd.quit)
_ feedback enable,python,output
_ print ' '
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