1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
|
# Importing the PyMOL module will create the window.
import pymol
# Call the function below before using any PyMOL modules.
pymol.finish_launching()
# Now we can import cmd
from pymol import cmd
if os.path.exists("$PYMOL_PATH/test/dat/pept.pdb"):
cmd.load("$PYMOL_PATH/test/dat/pept.pdb")
else:
from inspect import getsourcefile
current_file_dir = os.path.dirname(os.path.abspath(getsourcefile(lambda:0)))
cmd.load(os.path.join(current_file_dir, "../../test/dat/pept.pdb"))
# Note that in typical Debian package installation test/... directory would be
# located at /usr/share/pymol directory, and $PYMOL_PATH will point to different
# location.
cmd.show("sticks")
|
