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<html>
<head>
<meta http-equiv="Pragma" content="no-cache"/>
<meta http-equiv="Cache-Control" content="no-cache"/>
<meta http-equiv="Expires" content="-1" />
<title>Web Services - Sample 07: Using a FORM with PyMOL Web Services </title>
<style><!--
a
{ text-decoration:none;
padding: 1px;
background-color: #dddddd
}
span.highlight
{
background-color: yellow
}
-->
</style>
<script type="text/javascript">
// convenience function for issuing PyMOL methods (one per javascript event);
// for toggling visibility of the IFRAME
function toggle() {
var iframe = document.getElementById("pymol_response_iframe");
if (iframe.width!=0) {
iframe.width=0; iframe.height=0; iframe.frameBorder=0;
} else {
iframe.width="100%"; iframe.height=100; iframe.frameBorder=1;
}
}
function show(cb) {
// reset the action of this form to the appropriate command show or hide
if (cb.checked) {
cb.form.action = "/apply/pymol.cmd.show";
} else {
cb.form.action = "/apply/pymol.cmd.hide";
}
// "representation" is the operative PyMOL keyword; be sure to set its value
cb.form.representation.value = cb.value;
cb.form.submit();
}
</script>
</head>
<body>
<h3>Web Services - Sample 07: Using a FORM with PyMOL Web Services</h3>
<a href="javascript:void(0)" onclick="toggle()">toggle iframe</a>
<a href="/apply/_quit">quit pymol</a>
(FireFox only: <a href="javascript:void(0)" onclick="window.open('view-source:' + location.href)">view page source</a>)
<p>
Here we use an HTML FORM to show how buttons, checkboxes and other
INPUT elements can be used with PyMOL Web Services.
This load button is displayed by the following HTML code.
</p>
<FORM ACTION="/apply/pymol.cmd.load" TARGET=pymol_response_iframe>
<INPUT TYPE=SUBMIT VALUE="load"> pept
<INPUT TYPE=HIDDEN NAME="filename" value="$PYMOL_PATH/test/dat/pept.pdb">
</FORM>
<pre>
<FORM ACTION="/apply/pymol.cmd.load" TARGET=pymol_response_iframe>
<INPUT TYPE=HIDDEN NAME=filename value="$PYMOL_PATH/test/dat/pept.pdb">
<INPUT TYPE=SUBMIT VALUE="load"> pept
</FORM>
</pre>
In a FORM, the PyMOL command is the FORM's ACTION,
and each PyMOL command argument is a seperate INPUT element.
Here are a few other uses. Use the "view page source" link above
to see the details of how this is done.
</p>
<!-- the ACTION may be changed in show() function, depending on the chekced value -->
<FORM NAME=checks ACTION="/apply/pymol.cmd.show" TARGET=pymol_response_iframe>
Show pept as:
<INPUT TYPE=HIDDEN NAME="selection" VALUE="pept">
<INPUT TYPE=HIDDEN NAME="representation" VALUE="">
<!-- using unique names for each checkbox makes show() javascript easier,
but we need to use NAMEs like _sticks, with underscore, to alert
PyMOL that these arguments names are to be ignored -->
<INPUT TYPE=CHECKBOX NAME="_sticks" VALUE="sticks" onClick=show(this)>sticks
<INPUT TYPE=CHECKBOX NAME="_lines" VALUE="lines" onClick=show(this) checked>lines
<INPUT TYPE=CHECKBOX NAME="_spheres" VALUE="spheres" onClick=show(this)>spheres
<INPUT TYPE=CHECKBOX NAME="_cartoon" VALUE="cartoon" onClick=show(this)>cartoon
</FORM>
<FORM ACTION="/apply/pymol.cmd.delete" TARGET=pymol_response_iframe>
<INPUT TYPE=HIDDEN NAME="name" VALUE="pept">
<INPUT TYPE=SUBMIT VALUE="delete"> pept
</FORM>
<p>
The previous example had a hard-coded filename, but the filename
could be selected from a menu, as in:
<FORM ACTION="/apply/pymol.cmd.load" TARGET=pymol_response_iframe>
<INPUT TYPE=SUBMIT VALUE="load">
<SELECT NAME=filename>
<option value="$PYMOL_PATH/test/dat/1tii.pdb">1tii.pdb</option>
<option value="$PYMOL_PATH/test/dat/3al1.pdb">3al1.pdb</option>
<option value="$PYMOL_PATH/test/dat/helix_amber.pdb">helix_amber.pdb</option>
<option value="$PYMOL_PATH/test/dat/il2.pdb">il2.pdb</option>
<option value="$PYMOL_PATH/test/dat/names.pdb">names.pdb</option>
<option value="$PYMOL_PATH/test/dat/odd01.pdb">odd01.pdb</option>
<option value="$PYMOL_PATH/test/dat/odd02.pdb">odd02.pdb</option>
<option value="$PYMOL_PATH/test/dat/pept.pdb">pept.pdb</option>
<option value="$PYMOL_PATH/test/dat/small02.pdb">small02.pdb</option>
<option value="$PYMOL_PATH/test/dat/tiny.pdb">tiny.pdb</option>
<option value="$PYMOL_PATH/test/dat/water.pdb">water.pdb</option>
</SELECT>
</FORM>
<FORM NAME=checks ACTION="/apply/pymol.cmd.show" TARGET=pymol_response_iframe>
Show all as:
<INPUT TYPE=HIDDEN NAME="representation" VALUE="">
<INPUT TYPE=CHECKBOX NAME="_lines" VALUE="lines" onClick=show(this) checked>lines
<INPUT TYPE=CHECKBOX NAME="_sticks" VALUE="ribbon" onClick=show(this)>ribbon
<INPUT TYPE=CHECKBOX NAME="_cartoon" VALUE="cartoon" onClick=show(this)>cartoon
<INPUT TYPE=CHECKBOX NAME="_spheres" VALUE="nonbonded" onClick=show(this) checked>water
</FORM>
<FORM ACTION="/apply/pymol.cmd.reinitialize" TARGET=pymol_response_iframe>
<INPUT TYPE=SUBMIT VALUE="reinitialize">
</FORM>
</p>
<p>
Finally, we see how a file can be uploaded to PyMOL. Using a
FORM is currently the only way a file can be read from the local
machine to be loaded into PyMOL using a web page.
There are several essential differences when using a FORM intended to
upload a file to PyMOL. These are:<UL>
<LI>The METHOD=POST is required.</LI>
<LI>The ENCTYPE=multipart/form-data is required.</LI>
<LI>The command is read_pdbstr instead of load.</LI>
<LI>Two arguments are required: pdb (the pdb "string") and name (the name to be used for the object).</LI>
</UL>
<pre>
<FORM ACTION="/apply/pymol.cmd.<span class=highlight>read_pdbstr"</span> TARGET=pymol_response_iframe
<span class=highlight>METHOD=POST</span> <span class=highlight>ENCTYPE="multipart/form-data"</span>
PDB File: <INPUT TYPE=FILE <span class=highlight>NAME="pdb"</span>>
Name: <INPUT TYPE=TEXT <span class=highlight>NAME="name"</span> VALUE="mypdb">
<INPUT TYPE=SUBMIT VALUE="load">
</FORM>
</pre>
<p>
The above HTML displays the form below.
</p>
<FORM ACTION="/apply/pymol.cmd.read_pdbstr" TARGET=pymol_response_iframe
METHOD=POST ENCTYPE="multipart/form-data">
PDB File: <INPUT TYPE=FILE NAME="pdb">
Name: <INPUT TYPE=TEXT NAME="name" VALUE="mypdb">
<INPUT TYPE=SUBMIT VALUE="load">
</FORM>
The checkboxes above that "Show all as:" will also continue to work.
They have been coded to NOT use a selection keyword, and so they apply to all
objects in PyMOL. However, they may not be in sync with the current PyMOL
display.
They can be toggled on and off to get them in sync.
</p>
<pre></pre>
<iframe id="pymol_response_iframe" name="pymol_response_iframe"
src="/apply"
width="100%" height="100" frameborder="1"
scrolling="auto"></iframe>
</body>
</html>
|
