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PyMOL>load lrg/map.ccp4
ObjectMapCCP4: Map Size 88 x 61 x 67
ObjectMapCCP4: Normalizing with mean = 0.000987 and stdev = 0.265128.
ObjectMap: Map Read. Range = -3.439 to 4.509
Crystal: Unit Cell 91.144 91.144 45.856
Crystal: Alpha Beta Gamma 90.000 90.000 90.000
Crystal: RealToFrac Matrix
Crystal: 0.0110 0.0000 0.0000
Crystal: 0.0000 0.0110 0.0000
Crystal: 0.0000 0.0000 0.0218
Crystal: FracToReal Matrix
Crystal: 91.1443 0.0000 0.0000
Crystal: 0.0000 91.1443 0.0000
Crystal: 0.0000 0.0000 45.8557
Crystal: Unit Cell Volume 380936.
ExecutiveLoad: "lrg/map.ccp4" loaded as "map", through state 0.
PyMOL>isosurf m1,map,1.0
Executive: object "m1" created.
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 433402 graphics primitives.
PyMOL>isosurf m1,map,0.5
Isosurface: created "m1", setting level to 0.500
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 763516 graphics primitives.
PyMOL>isosurf m1,map,500
Isosurface: created "m1", setting level to 500.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 0 graphics primitives.
PyMOL>isosurf m1,map,-3000
Isosurface: created "m1", setting level to -3000.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 0 graphics primitives.
PyMOL>dele m1
Executive: object "m2" created.
Isosurface: created "m2", setting level to 1.100
Isosurface: created "m2", setting level to 1.200
Isosurface: created "m2", setting level to 1.300
Isosurface: created "m2", setting level to 1.400
Isosurface: created "m2", setting level to 1.500
Isosurface: created "m2", setting level to 1.600
Isosurface: created "m2", setting level to 1.700
Isosurface: created "m2", setting level to 1.800
Isosurface: created "m2", setting level to 1.900
PyMOL>ray renderer=2
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
RayRenderTest: obtained 404568 graphics primitives.
PyMOL>frame 3
PyMOL>ray renderer=2
RayRenderTest: obtained 360028 graphics primitives.
PyMOL>frame 8
PyMOL>ray renderer=2
RayRenderTest: obtained 269484 graphics primitives.
PyMOL>dele all
PyMOL>load lrg/map.xplor
ObjectMapLoadXPLOR: Loading...
ObjectMap: Map Read. Range = -3.439 to 8.717
Crystal: Unit Cell 91.144 91.144 45.856
Crystal: Alpha Beta Gamma 90.000 90.000 90.000
Crystal: RealToFrac Matrix
Crystal: 0.0110 0.0000 0.0000
Crystal: 0.0000 0.0110 0.0000
Crystal: 0.0000 0.0000 0.0218
Crystal: FracToReal Matrix
Crystal: 91.1443 0.0000 0.0000
Crystal: 0.0000 91.1443 0.0000
Crystal: 0.0000 0.0000 45.8557
Crystal: Unit Cell Volume 380936.
ExecutiveLoad: "lrg/map.xplor" loaded as "map", through state 0.
PyMOL>isosurf m1,map,1.0
Executive: object "m1" created.
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 433390 graphics primitives.
PyMOL>isosurf m1,map,0.5
Isosurface: created "m1", setting level to 0.500
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 763516 graphics primitives.
PyMOL>isosurf m1,map,500
Isosurface: created "m1", setting level to 500.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 0 graphics primitives.
PyMOL>isosurf m1,map,-3000
Isosurface: created "m1", setting level to -3000.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 0 graphics primitives.
PyMOL>dele m1
Executive: object "m2" created.
Isosurface: created "m2", setting level to 1.100
Isosurface: created "m2", setting level to 1.200
Isosurface: created "m2", setting level to 1.300
Isosurface: created "m2", setting level to 1.400
Isosurface: created "m2", setting level to 1.500
Isosurface: created "m2", setting level to 1.600
Isosurface: created "m2", setting level to 1.700
Isosurface: created "m2", setting level to 1.800
Isosurface: created "m2", setting level to 1.900
PyMOL>ray renderer=2
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
ObjectSurface: updating "m2".
RayRenderTest: obtained 269484 graphics primitives.
PyMOL>frame 3
PyMOL>ray renderer=2
RayRenderTest: obtained 360028 graphics primitives.
PyMOL>frame 8
PyMOL>ray renderer=2
RayRenderTest: obtained 269484 graphics primitives.
PyMOL>dele all
PyMOL>load lrg/map.ccp4
ObjectMapCCP4: Map Size 88 x 61 x 67
ObjectMapCCP4: Normalizing with mean = 0.000987 and stdev = 0.265128.
ObjectMap: Map Read. Range = -3.439 to 4.509
Crystal: Unit Cell 91.144 91.144 45.856
Crystal: Alpha Beta Gamma 90.000 90.000 90.000
Crystal: RealToFrac Matrix
Crystal: 0.0110 0.0000 0.0000
Crystal: 0.0000 0.0110 0.0000
Crystal: 0.0000 0.0000 0.0218
Crystal: FracToReal Matrix
Crystal: 91.1443 0.0000 0.0000
Crystal: 0.0000 91.1443 0.0000
Crystal: 0.0000 0.0000 45.8557
Crystal: Unit Cell Volume 380936.
ExecutiveLoad: "lrg/map.ccp4" loaded as "map", through state 0.
PyMOL>load lrg/ref.pdb
ObjectMolecule: Read crystal symmetry information.
Symmetry: Found 8 symmetry operators.
CmdLoad: "lrg/ref.pdb" loaded as "ref".
PyMOL>isosurf m1,map,1.0,(ref)
Executive: object "m1" created.
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 257876 graphics primitives.
PyMOL>isosurf m1,map,1.0,A/10:20/
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 25640 graphics primitives.
PyMOL>isosurf m1,map,1.0,A/50:60/
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 24328 graphics primitives.
PyMOL>isosurf m1,map,1.0,A/100/
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 2440 graphics primitives.
PyMOL>isosurf m1,map,1.0,A/100/,2.0
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 3374 graphics primitives.
PyMOL>isosurf m1,map,1.0,A/100/,4.0
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 6058 graphics primitives.
PyMOL>isosurf m1,map,1.0,A/53/,carve=2.0
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 3592 graphics primitives.
PyMOL>isosurf m1,map,1.0,A/53/,carve=100
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 435444 graphics primitives.
PyMOL>isosurf m1,map,1.0,A/53/,carve=-0.5
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 3732 graphics primitives.
PyMOL>isosurf m1,map,1.0,A/53/,carve=10
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 40489 graphics primitives.
PyMOL>isosurf m1,map,1.0,A/53/,carve=0.0
Isosurface: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectSurface: updating "m1".
RayRenderTest: obtained 2810 graphics primitives.
PyMOL>dele all
PyMOL>load lrg/map.ccp4
ObjectMapCCP4: Map Size 88 x 61 x 67
ObjectMapCCP4: Normalizing with mean = 0.000987 and stdev = 0.265128.
ObjectMap: Map Read. Range = -3.439 to 4.509
Crystal: Unit Cell 91.144 91.144 45.856
Crystal: Alpha Beta Gamma 90.000 90.000 90.000
Crystal: RealToFrac Matrix
Crystal: 0.0110 0.0000 0.0000
Crystal: 0.0000 0.0110 0.0000
Crystal: 0.0000 0.0000 0.0218
Crystal: FracToReal Matrix
Crystal: 91.1443 0.0000 0.0000
Crystal: 0.0000 91.1443 0.0000
Crystal: 0.0000 0.0000 45.8557
Crystal: Unit Cell Volume 380936.
ExecutiveLoad: "lrg/map.ccp4" loaded as "map", through state 0.
PyMOL>isodot m1,map,1.0
Executive: object "m1" created.
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 78933 graphics primitives.
PyMOL>isodot m1,map,0.5
Isomesh: created "m1", setting level to 0.500
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 140052 graphics primitives.
PyMOL>isodot m1,map,500
Isomesh: created "m1", setting level to 500.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 0 graphics primitives.
PyMOL>isodot m1,map,-3000
Isomesh: created "m1", setting level to -3000.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 0 graphics primitives.
PyMOL>dele m1
Executive: object "m2" created.
Isomesh: created "m2", setting level to 1.100
Isomesh: created "m2", setting level to 1.200
Isomesh: created "m2", setting level to 1.300
Isomesh: created "m2", setting level to 1.400
Isomesh: created "m2", setting level to 1.500
Isomesh: created "m2", setting level to 1.600
Isomesh: created "m2", setting level to 1.700
Isomesh: created "m2", setting level to 1.800
Isomesh: created "m2", setting level to 1.900
PyMOL>ray renderer=2
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
RayRenderTest: obtained 49569 graphics primitives.
PyMOL>frame 3
PyMOL>ray renderer=2
RayRenderTest: obtained 65725 graphics primitives.
PyMOL>frame 8
PyMOL>ray renderer=2
RayRenderTest: obtained 49569 graphics primitives.
PyMOL>dele all
PyMOL>load lrg/map.xplor
ObjectMapLoadXPLOR: Loading...
ObjectMap: Map Read. Range = -3.439 to 8.717
Crystal: Unit Cell 91.144 91.144 45.856
Crystal: Alpha Beta Gamma 90.000 90.000 90.000
Crystal: RealToFrac Matrix
Crystal: 0.0110 0.0000 0.0000
Crystal: 0.0000 0.0110 0.0000
Crystal: 0.0000 0.0000 0.0218
Crystal: FracToReal Matrix
Crystal: 91.1443 0.0000 0.0000
Crystal: 0.0000 91.1443 0.0000
Crystal: 0.0000 0.0000 45.8557
Crystal: Unit Cell Volume 380936.
ExecutiveLoad: "lrg/map.xplor" loaded as "map", through state 0.
PyMOL>isodot m1,map,1.0
Executive: object "m1" created.
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 78933 graphics primitives.
PyMOL>isodot m1,map,0.5
Isomesh: created "m1", setting level to 0.500
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 140052 graphics primitives.
PyMOL>isodot m1,map,500
Isomesh: created "m1", setting level to 500.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 0 graphics primitives.
PyMOL>isodot m1,map,-3000
Isomesh: created "m1", setting level to -3000.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 0 graphics primitives.
PyMOL>dele m1
Executive: object "m2" created.
Isomesh: created "m2", setting level to 1.100
Isomesh: created "m2", setting level to 1.200
Isomesh: created "m2", setting level to 1.300
Isomesh: created "m2", setting level to 1.400
Isomesh: created "m2", setting level to 1.500
Isomesh: created "m2", setting level to 1.600
Isomesh: created "m2", setting level to 1.700
Isomesh: created "m2", setting level to 1.800
Isomesh: created "m2", setting level to 1.900
PyMOL>ray renderer=2
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
ObjectMesh: updating "m2".
RayRenderTest: obtained 49569 graphics primitives.
PyMOL>frame 3
PyMOL>ray renderer=2
RayRenderTest: obtained 65725 graphics primitives.
PyMOL>frame 8
PyMOL>ray renderer=2
RayRenderTest: obtained 49569 graphics primitives.
PyMOL>dele all
PyMOL>load lrg/map.ccp4
ObjectMapCCP4: Map Size 88 x 61 x 67
ObjectMapCCP4: Normalizing with mean = 0.000987 and stdev = 0.265128.
ObjectMap: Map Read. Range = -3.439 to 4.509
Crystal: Unit Cell 91.144 91.144 45.856
Crystal: Alpha Beta Gamma 90.000 90.000 90.000
Crystal: RealToFrac Matrix
Crystal: 0.0110 0.0000 0.0000
Crystal: 0.0000 0.0110 0.0000
Crystal: 0.0000 0.0000 0.0218
Crystal: FracToReal Matrix
Crystal: 91.1443 0.0000 0.0000
Crystal: 0.0000 91.1443 0.0000
Crystal: 0.0000 0.0000 45.8557
Crystal: Unit Cell Volume 380936.
ExecutiveLoad: "lrg/map.ccp4" loaded as "map", through state 0.
PyMOL>load lrg/ref.pdb
ObjectMolecule: Read crystal symmetry information.
Symmetry: Found 8 symmetry operators.
CmdLoad: "lrg/ref.pdb" loaded as "ref".
PyMOL>isodot m1,map,1.0,(ref)
Executive: object "m1" created.
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 48210 graphics primitives.
PyMOL>isodot m1,map,1.0,A/10:20/
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 6340 graphics primitives.
PyMOL>isodot m1,map,1.0,A/50:60/
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 6266 graphics primitives.
PyMOL>isodot m1,map,1.0,A/100/
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 2133 graphics primitives.
PyMOL>isodot m1,map,1.0,A/100/,2.0
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 2308 graphics primitives.
PyMOL>isodot m1,map,1.0,A/100/,4.0
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 2850 graphics primitives.
PyMOL>isodot m1,map,1.0,A/53/,carve=2.0
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 2238 graphics primitives.
PyMOL>isodot m1,map,1.0,A/53/,carve=100
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 80975 graphics primitives.
PyMOL>isodot m1,map,1.0,A/53/,carve=-0.5
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 2378 graphics primitives.
PyMOL>isodot m1,map,1.0,A/53/,carve=10
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 7732 graphics primitives.
PyMOL>isodot m1,map,1.0,A/53/,carve=0.0
Isomesh: created "m1", setting level to 1.000
PyMOL>ray renderer=2
ObjectMesh: updating "m1".
RayRenderTest: obtained 2222 graphics primitives.
|
