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'''
Update PyMOL's copy of the molfile plugins
'''
import os
molfile_src_path = "/tmp/plugins/molfile_plugin/src"
if not os.path.isdir(molfile_src_path):
raise SystemExit('noch such dir: ' + molfile_src_path)
# remove existing generated files
os.system("/bin/rm src/*")
src_list = []
blacklist = [
'babelplugin', # requires openbabel
'cpmdlogplugin', #
'cpmdplugin', #
'gaussianplugin', #
'hoomdplugin', # requires expat
'lammpsplugin', # requires gz
'webpdbplugin', # tcl dependent
'tngplugin', # requires Gromacs TNG library
'dmsplugin', # requires sqlite3
]
for in_file in sorted(os.listdir(molfile_src_path)):
pref, ext = os.path.splitext(in_file)
if not pref.endswith('plugin'):
continue
if pref in blacklist:
continue
if ext in ['.C', '.cxx']:
ext = '.cpp'
elif ext not in ['.c']:
continue
print("processing: " + pref)
in_file = os.path.join(molfile_src_path, in_file)
out_file = os.path.join('src', pref + ext)
input = open(in_file, 'rb').readlines()
src_list.append(pref)
with open(out_file,'wb') as g:
g.write(b"/* MACHINE GENERATED FILE, DO NOT EDIT! */\n\n")
g.write(b"#define VMDPLUGIN molfile_%s\n" % pref.encode())
g.write(b"#define STATIC_PLUGIN 1\n\n")
for i, line in enumerate(input, 1):
# no including of hash.c, inthash.c like header files
if line.startswith(b'#define VMDPLUGIN_STATIC'):
continue
# included, don't compile separatly
line = line.replace(b'"ply.c"', b'"ply_c.h"')
g.write(line)
with open("src/PlugIOManagerInit.c", 'w') as g:
g.write("/* MACHINE GENERATED FILE, DO NOT EDIT! */\n\n")
g.write('#include "vmdplugin.h"\n\n')
g.write('struct PyMOLGlobals;\n');
g.write('/* prototypes */\n')
for pref in src_list:
g.write("int molfile_%s_init(void);\n"%pref)
g.write("int molfile_%s_register(void *,vmdplugin_register_cb);\n"%pref)
g.write("int molfile_%s_fini(void);\n"%pref)
g.write('''
int PlugIOManagerRegister(struct PyMOLGlobals *G, vmdplugin_t *);
int PlugIOManagerInitAll(struct PyMOLGlobals *G);
int PlugIOManagerInitAll(struct PyMOLGlobals *G)
{
int ok=1;
''')
for pref in src_list:
g.write("if(ok) ok = ok && (molfile_%s_init() == VMDPLUGIN_SUCCESS);\n"%pref)
g.write('''
if(ok) {
''')
for pref in src_list:
g.write("if(ok) ok = ok && (molfile_%s_register(G,(vmdplugin_register_cb)PlugIOManagerRegister) == VMDPLUGIN_SUCCESS);\n"%pref)
g.write('''
}
return ok;
}
''')
g.write('''
int PlugIOManagerFreeAll(void);
int PlugIOManagerFreeAll(void)
{
int ok=1;
''')
for pref in src_list:
g.write("if(ok) ok = ok && (molfile_%s_fini() == VMDPLUGIN_SUCCESS);\n"%pref)
g.write('''
return ok;
}\n''')
if True:
os.system("/bin/cp %s/*.h* src/"%molfile_src_path)
os.system("/bin/cp %s/hash.c src/"%molfile_src_path)
os.system("/bin/cp %s/inthash.c src/" % molfile_src_path)
os.system("/bin/cp %s/ply.c src/ply_c.h" % molfile_src_path) # included
os.system("/bin/cp %s/../../include/*.h ../include/" % molfile_src_path)
os.system("/bin/cp %s/../LICENSE ./" % molfile_src_path)
os.system("patch -p5 -i post.patch")
os.system("/bin/chmod -x src/*")
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