1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
|
# This script reads a HOLE ".vmd_tri" file into PyMOL
# all you need to do is set the filename path
input = "example.vmd_tri"
# and then run PyMOL using this script:
#
# pymol hole_vmd_tri.pym
import string
from pymol.cgo import *
from pymol import cmd
cgo = [ BEGIN, TRIANGLES ]
for line in open(input).readlines():
field = string.split(string.strip(line))
if len(field)==32:
if field[0] == 'draw' and field[1] == 'trinorm':
cgo.append( NORMAL )
cgo.extend( map(float, field[18:21]) )
cgo.append( VERTEX )
cgo.extend( map(float, field[3:6]) )
cgo.append( NORMAL )
cgo.extend( map(float, field[23:26]) )
cgo.append( VERTEX )
cgo.extend( map(float, field[8:11]) )
cgo.append( NORMAL )
cgo.extend( map(float, field[28:31]) )
cgo.append( VERTEX )
cgo.extend( map(float, field[13:16]) )
cgo.append(END)
cmd.load_cgo(cgo, "hole")
|
