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# experimental demonstration of firing up a web browser based on
# clicks in the 3D viewer
# simply "run" this script from within PyMOL itself (file menu) or
# ./pymol link_demo.py
import webbrowser
import pymol
from pymol.wizard import Wizard
from pymol import cmd, util
import pymol
# Wizard class definition
class Clickurl(Wizard):
def __init__(self,_self=cmd):
Wizard.__init__(self,_self)
self.cmd.unpick()
def get_prompt(self):
self.prompt = [ 'Please click a labelled atom...' ]
return self.prompt
def get_panel(self):
return [
[ 2, 'Done','cmd.set_wizard()'],
]
def do_select(self,name):
pymol.stored.link = ''
cmd.iterate(name,"stored.link=custom")
if len(pymol.stored.link):
webbrowser.open(pymol.stored.link)
cmd.delete(name)
# load an example structure
cmd.load("$TUT/1hpv.pdb")
# color by chain (aesthetics)
util.cbc()
# store the links as atom text_types
cmd.alter("name CA",r"custom='http://delsci.info/cgi-bin/click.cgi?residue=%s%s%s'%(resn,resi,chain)")
# put the mouse into single-atom selection mode
cmd.set('mouse_selection_mode',0)
# just show ribbon (means we can only select labelled C-alphas)
cmd.show_as("cartoon")
# set up the labels
cmd.label("name CA","'Link'")
# color the labels white
cmd.set("label_color", 'white')
# activate the wizard
cmd.set_wizard(Clickurl())
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