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'''
Alignment fails with atoms w/o coordinates in a state
'''
import pymol
from pymol import cmd, testing
@testing.requires_version('1.7.7')
class Test2597(testing.PyMOLTestCase):
def testAlignMissingCoords(self):
filename = self.datafile('1t46-frag.pdb')
cmd.load(filename, 'm1')
cmd.remove('m1 & resi 600-605')
cmd.load(filename, 'm1', state=2)
cmd.load(filename, 'm2')
cmd.remove('m2 & resi 620-625')
cmd.load(filename, 'm2', state=2)
cmd.align('m1', 'm2', object='aln', mobile_state=1, target_state=1, cycles=0)
self.assertIn('aln', cmd.get_names())
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