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#!/usr/bin/env python
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##
#
# See COPYING file distributed along with the PyMVPA package for the
# copyright and license terms.
#
### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##
"""Python distutils setup for PyMVPA"""
from numpy.distutils.core import setup, Extension
import os
import sys
from glob import glob
# some config settings
bind_libsvm = 'local' # choices: 'local', 'system', None
libsvmc_extra_sources = []
libsvmc_include_dirs = []
libsvmc_libraries = []
extra_link_args = []
libsvmc_library_dirs = []
# platform-specific settings
if sys.platform == "darwin":
extra_link_args.append("-bundle")
if sys.platform.startswith('linux'):
# need to look for numpy (header location changes with v1.3)
libsvmc_include_dirs += ['/usr/include/numpy']
# when libsvm is forced -- before it was used only in cases
# when libsvm was available at system level, hence we switch
# from local to system at this point
# TODO: Deprecate --with-libsvm for 0.5
for arg in ('--with-libsvm', '--with-system-libsvm'):
if not sys.argv.count(arg):
continue
# clean argv if necessary (or distutils will complain)
sys.argv.remove(arg)
# assure since default is 'auto' wouldn't fail if it is N/A
bind_libsvm = 'system'
# when no libsvm bindings are requested explicitly
if sys.argv.count('--no-libsvm'):
# clean argv if necessary (or distutils will complain)
sys.argv.remove('--no-libsvm')
bind_libsvm = None
# if requested:
if bind_libsvm == 'local':
# we will provide libsvm sources later on # if libsvm.a is available locally -- use it
#if os.path.exists(os.path.join('build', 'libsvm', 'libsvm.a')):
libsvm_3rd_path = os.path.join('3rd', 'libsvm')
libsvmc_include_dirs += [libsvm_3rd_path]
libsvmc_extra_sources = [os.path.join(libsvm_3rd_path, 'svm.cpp')]
elif bind_libsvm == 'system':
# look for libsvm in some places, when local one is not used
libsvmc_libraries += ['svm']
if not sys.platform.startswith('win'):
libsvmc_include_dirs += [
'/usr/include/libsvm-2.0/libsvm',
'/usr/include/libsvm',
'/usr/local/include/libsvm',
'/usr/local/include/libsvm-2.0/libsvm',
'/usr/local/include']
else:
# no clue on windows
pass
elif bind_libsvm is None:
pass
else:
raise ValueError("Shouldn't happen that we get bind_libsvm=%r"
% (bind_libsvm,))
# define the extension modules
libsvmc_ext = Extension(
'mvpa.clfs.libsvmc._svmc',
sources = libsvmc_extra_sources + ['mvpa/clfs/libsvmc/svmc.i'],
include_dirs = libsvmc_include_dirs,
library_dirs = libsvmc_library_dirs,
libraries = libsvmc_libraries,
language = 'c++',
extra_link_args = extra_link_args,
swig_opts = ['-I' + d for d in libsvmc_include_dirs])
smlrc_ext = Extension(
'mvpa.clfs.libsmlrc.smlrc',
sources = [ 'mvpa/clfs/libsmlrc/smlr.c' ],
#library_dirs = library_dirs,
libraries = ['m'],
# extra_compile_args = ['-O0'],
extra_link_args = extra_link_args,
language = 'c')
ext_modules = [smlrc_ext]
if bind_libsvm:
ext_modules.append(libsvmc_ext)
# Notes on the setup
# Version scheme is: major.minor.patch<suffix>
# define the setup
setup(name = 'pymvpa',
version = '0.4.5.dev',
author = 'Michael Hanke, Yaroslav Halchenko, Per B. Sederberg',
author_email = 'pkg-exppsy-pymvpa@lists.alioth.debian.org',
license = 'MIT License',
url = 'http://www.pymvpa.org',
description = 'Multivariate pattern analysis',
long_description = \
"PyMVPA is a Python module intended to ease pattern classification " \
"analyses of large datasets. It provides high-level abstraction of " \
"typical processing steps and a number of implementations of some " \
"popular algorithms. While it is not limited to neuroimaging data " \
"it is eminently suited for such datasets.\n" \
"PyMVPA is truly free software (in every respect) and " \
"additionally requires nothing but free-software to run.",
# please maintain alphanumeric order
packages = [ 'mvpa',
'mvpa.algorithms',
'mvpa.atlases',
'mvpa.base',
'mvpa.clfs',
'mvpa.clfs.libsmlrc',
'mvpa.clfs.libsvmc',
'mvpa.clfs.sg',
'mvpa.datasets',
'mvpa.featsel',
'mvpa.mappers',
'mvpa.measures',
'mvpa.misc',
'mvpa.misc.bv',
'mvpa.misc.fsl',
'mvpa.misc.io',
'mvpa.misc.plot',
'mvpa.support',
'mvpa.tests',
'mvpa.tests.badexternals',
],
data_files = [('mvpa/data',
[f for f in glob(os.path.join('mvpa', 'data', '*'))
if os.path.isfile(f)]),
('mvpa/data/bv',
[f for f in glob(os.path.join('mvpa', 'data', 'bv', '*'))
if os.path.isfile(f)])],
scripts = glob(os.path.join('bin', '*')),
ext_modules = ext_modules
)
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