1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
|
def test_write_bed(chip_10, tmp_path):
outfile = tmp_path / "deleteme.bed"
chip_10.to_bed(outfile)
def test_write_bed_no_path(chip_10):
result = chip_10.to_bed()
assert isinstance(result, str)
def test_write_gtf(chip_10, tmp_path):
outfile = tmp_path / "deleteme.gtf"
chip_10.to_gtf(outfile)
def test_write_gff3(chip_10, tmp_path):
outfile = tmp_path / "deleteme.gff3"
chip_10.to_gff3(outfile)
def test_write_gtf_no_path(chip_10):
result = chip_10.to_gtf()
assert isinstance(result, str)
def test_write_bigwig(chip_10, tmp_path, chromsizes):
outfile = tmp_path / "deleteme.bigwig"
outpath = str(outfile)
chip_10.to_bigwig(outpath, chromosome_sizes=chromsizes)
|
