1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
|
Source: pyranges
Section: python
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>, Nilesh Patra <npatra974@gmail.com>
Build-Depends: debhelper-compat (= 13),
dh-python,
python3-setuptools,
python3-all,
python3-ncls <!nocheck>,
python3-pyrle <!nocheck>,
python3-pytest <!nocheck>,
python3-sorted-nearest,
python3-hypothesis,
bedtools,
samtools
Standards-Version: 4.5.0
Homepage: https://github.com/biocore-ntnu/pyranges
Vcs-Browser: https://salsa.debian.org/med-team/pyranges
Vcs-Git: https://salsa.debian.org/med-team/pyranges.git
Testsuite: autopkgtest-pkg-python
Rules-Requires-Root: no
Package: python3-pyranges
Architecture: all
Depends: ${python3:Depends}, ${misc:Depends}
Suggests: python-pyranges-doc
Description: 2D representation of genomic intervals and their annotations
A PyRanges object must have the columns Chromosome, Start and
End. These describe the genomic position and function as implicit row
labels. A Strand column is optional and adds strand information to the
intervals. Any other columns are allowed and are considered metadata.
.
The structure can be filled from .bed, .bam or .gff files, also from
tabular or textual representations.
|
