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##gff-version 3
#description: evidence-based annotation of the human genome (GRCh38), version 28 (Ensembl 92)
#provider: GENCODE
#contact: gencode-help@ebi.ac.uk
#format: gff3
#date: 2018-03-23
##sequence-region chr1 1 248956422
chr1 HAVANA gene 11869 14409 . + . ID=ENSG00000223972.5;gene_id=ENSG00000223972.5;gene_type=transcribed_unprocessed_pseudogene;gene_name=DDX11L1;level=2;havana_gene=OTTHUMG00000000961.2
chr1 HAVANA transcript 11869 14409 . + . ID=ENST00000456328.2;Parent=ENSG00000223972.5;gene_id=ENSG00000223972.5;transcript_id=ENST00000456328.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=DDX11L1;transcript_type=processed_transcript;transcript_name=RP11-34P13.1-002;level=2;transcript_support_level=1;tag=basic;havana_gene=OTTHUMG00000000961.2;havana_transcript=OTTHUMT00000362751.1
chr1 HAVANA exon 11869 12227 . + . ID=exon:ENST00000456328.2:1;Parent=ENST00000456328.2;gene_id=ENSG00000223972.5;transcript_id=ENST00000456328.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=DDX11L1;transcript_type=processed_transcript;transcript_name=RP11-34P13.1-002;exon_number=1;exon_id=ENSE00002234944.1;level=2;transcript_support_level=1;tag=basic;havana_gene=OTTHUMG00000000961.2;havana_transcript=OTTHUMT00000362751.1
chr1 HAVANA exon 12613 12721 . + . ID=exon:ENST00000456328.2:2;Parent=ENST00000456328.2;gene_id=ENSG00000223972.5;transcript_id=ENST00000456328.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=DDX11L1;transcript_type=processed_transcript;transcript_name=RP11-34P13.1-002;exon_number=2;exon_id=ENSE00003582793.1;level=2;transcript_support_level=1;tag=basic;havana_gene=OTTHUMG00000000961.2;havana_transcript=OTTHUMT00000362751.1
chr1 HAVANA exon 13221 14409 . + . ID=exon:ENST00000456328.2:3;Parent=ENST00000456328.2;gene_id=ENSG00000223972.5;transcript_id=ENST00000456328.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=DDX11L1;transcript_type=processed_transcript;transcript_name=RP11-34P13.1-002;exon_number=3;exon_id=ENSE00002312635.1;level=2;transcript_support_level=1;tag=basic;havana_gene=OTTHUMG00000000961.2;havana_transcript=OTTHUMT00000362751.1
chr1 HAVANA transcript 12010 13670 . + . ID=ENST00000450305.2;Parent=ENSG00000223972.5;gene_id=ENSG00000223972.5;transcript_id=ENST00000450305.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=DDX11L1;transcript_type=transcribed_unprocessed_pseudogene;transcript_name=RP11-34P13.1-001;level=2;transcript_support_level=NA;ont=PGO:0000005,PGO:0000019;tag=basic;havana_gene=OTTHUMG00000000961.2;havana_transcript=OTTHUMT00000002844.2
chr1 HAVANA exon 12010 12057 . + . ID=exon:ENST00000450305.2:1;Parent=ENST00000450305.2;gene_id=ENSG00000223972.5;transcript_id=ENST00000450305.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=DDX11L1;transcript_type=transcribed_unprocessed_pseudogene;transcript_name=RP11-34P13.1-001;exon_number=1;exon_id=ENSE00001948541.1;level=2;transcript_support_level=NA;ont=PGO:0000005,PGO:0000019;tag=basic;havana_gene=OTTHUMG00000000961.2;havana_transcript=OTTHUMT00000002844.2
chr1 HAVANA exon 12179 12227 . + . ID=exon:ENST00000450305.2:2;Parent=ENST00000450305.2;gene_id=ENSG00000223972.5;transcript_id=ENST00000450305.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=DDX11L1;transcript_type=transcribed_unprocessed_pseudogene;transcript_name=RP11-34P13.1-001;exon_number=2;exon_id=ENSE00001671638.2;level=2;transcript_support_level=NA;ont=PGO:0000005,PGO:0000019;tag=basic;havana_gene=OTTHUMG00000000961.2;havana_transcript=OTTHUMT00000002844.2
chr1 HAVANA exon 12613 12697 . + . ID=exon:ENST00000450305.2:3;Parent=ENST00000450305.2;gene_id=ENSG00000223972.5;transcript_id=ENST00000450305.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=DDX11L1;transcript_type=transcribed_unprocessed_pseudogene;transcript_name=RP11-34P13.1-001;exon_number=3;exon_id=ENSE00001758273.2;level=2;transcript_support_level=NA;ont=PGO:0000005,PGO:0000019;tag=basic;havana_gene=OTTHUMG00000000961.2;havana_transcript=OTTHUMT00000002844.2
chr1 HAVANA exon 12975 13052 . + . ID=exon:ENST00000450305.2:4;Parent=ENST00000450305.2;gene_id=ENSG00000223972.5;transcript_id=ENST00000450305.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=DDX11L1;transcript_type=transcribed_unprocessed_pseudogene;transcript_name=RP11-34P13.1-001;exon_number=4;exon_id=ENSE00001799933.2;level=2;transcript_support_level=NA;ont=PGO:0000005,PGO:0000019;tag=basic;havana_gene=OTTHUMG00000000961.2;havana_transcript=OTTHUMT00000002844.2
chr1 HAVANA exon 13221 13374 . + . ID=exon:ENST00000450305.2:5;Parent=ENST00000450305.2;gene_id=ENSG00000223972.5;transcript_id=ENST00000450305.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=DDX11L1;transcript_type=transcribed_unprocessed_pseudogene;transcript_name=RP11-34P13.1-001;exon_number=5;exon_id=ENSE00001746346.2;level=2;transcript_support_level=NA;ont=PGO:0000005,PGO:0000019;tag=basic;havana_gene=OTTHUMG00000000961.2;havana_transcript=OTTHUMT00000002844.2
chr1 HAVANA exon 13453 13670 . + . ID=exon:ENST00000450305.2:6;Parent=ENST00000450305.2;gene_id=ENSG00000223972.5;transcript_id=ENST00000450305.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=DDX11L1;transcript_type=transcribed_unprocessed_pseudogene;transcript_name=RP11-34P13.1-001;exon_number=6;exon_id=ENSE00001863096.1;level=2;transcript_support_level=NA;ont=PGO:0000005,PGO:0000019;tag=basic;havana_gene=OTTHUMG00000000961.2;havana_transcript=OTTHUMT00000002844.2
chr1 HAVANA gene 14404 29570 . - . ID=ENSG00000227232.5;gene_id=ENSG00000227232.5;gene_type=unprocessed_pseudogene;gene_name=WASH7P;level=2;havana_gene=OTTHUMG00000000958.1
chr1 HAVANA transcript 14404 29570 . - . ID=ENST00000488147.1;Parent=ENSG00000227232.5;gene_id=ENSG00000227232.5;transcript_id=ENST00000488147.1;gene_type=unprocessed_pseudogene;gene_name=WASH7P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.2-001;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000000958.1;havana_transcript=OTTHUMT00000002839.1
chr1 HAVANA exon 29534 29570 . - . ID=exon:ENST00000488147.1:1;Parent=ENST00000488147.1;gene_id=ENSG00000227232.5;transcript_id=ENST00000488147.1;gene_type=unprocessed_pseudogene;gene_name=WASH7P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.2-001;exon_number=1;exon_id=ENSE00001890219.1;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000000958.1;havana_transcript=OTTHUMT00000002839.1
chr1 HAVANA exon 24738 24891 . - . ID=exon:ENST00000488147.1:2;Parent=ENST00000488147.1;gene_id=ENSG00000227232.5;transcript_id=ENST00000488147.1;gene_type=unprocessed_pseudogene;gene_name=WASH7P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.2-001;exon_number=2;exon_id=ENSE00003507205.1;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000000958.1;havana_transcript=OTTHUMT00000002839.1
chr1 HAVANA exon 18268 18366 . - . ID=exon:ENST00000488147.1:3;Parent=ENST00000488147.1;gene_id=ENSG00000227232.5;transcript_id=ENST00000488147.1;gene_type=unprocessed_pseudogene;gene_name=WASH7P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.2-001;exon_number=3;exon_id=ENSE00003477500.1;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000000958.1;havana_transcript=OTTHUMT00000002839.1
chr1 HAVANA exon 17915 18061 . - . ID=exon:ENST00000488147.1:4;Parent=ENST00000488147.1;gene_id=ENSG00000227232.5;transcript_id=ENST00000488147.1;gene_type=unprocessed_pseudogene;gene_name=WASH7P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.2-001;exon_number=4;exon_id=ENSE00003565697.1;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000000958.1;havana_transcript=OTTHUMT00000002839.1
chr1 HAVANA exon 17606 17742 . - . ID=exon:ENST00000488147.1:5;Parent=ENST00000488147.1;gene_id=ENSG00000227232.5;transcript_id=ENST00000488147.1;gene_type=unprocessed_pseudogene;gene_name=WASH7P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.2-001;exon_number=5;exon_id=ENSE00003475637.1;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000000958.1;havana_transcript=OTTHUMT00000002839.1
chr1 HAVANA exon 17233 17368 . - . ID=exon:ENST00000488147.1:6;Parent=ENST00000488147.1;gene_id=ENSG00000227232.5;transcript_id=ENST00000488147.1;gene_type=unprocessed_pseudogene;gene_name=WASH7P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.2-001;exon_number=6;exon_id=ENSE00003502542.1;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000000958.1;havana_transcript=OTTHUMT00000002839.1
chr1 HAVANA exon 16858 17055 . - . ID=exon:ENST00000488147.1:7;Parent=ENST00000488147.1;gene_id=ENSG00000227232.5;transcript_id=ENST00000488147.1;gene_type=unprocessed_pseudogene;gene_name=WASH7P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.2-001;exon_number=7;exon_id=ENSE00003553898.1;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000000958.1;havana_transcript=OTTHUMT00000002839.1
chr1 HAVANA exon 16607 16765 . - . ID=exon:ENST00000488147.1:8;Parent=ENST00000488147.1;gene_id=ENSG00000227232.5;transcript_id=ENST00000488147.1;gene_type=unprocessed_pseudogene;gene_name=WASH7P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.2-001;exon_number=8;exon_id=ENSE00003621279.1;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000000958.1;havana_transcript=OTTHUMT00000002839.1
chr1 HAVANA exon 15796 15947 . - . ID=exon:ENST00000488147.1:9;Parent=ENST00000488147.1;gene_id=ENSG00000227232.5;transcript_id=ENST00000488147.1;gene_type=unprocessed_pseudogene;gene_name=WASH7P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.2-001;exon_number=9;exon_id=ENSE00002030414.1;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000000958.1;havana_transcript=OTTHUMT00000002839.1
chr1 HAVANA exon 15005 15038 . - . ID=exon:ENST00000488147.1:10;Parent=ENST00000488147.1;gene_id=ENSG00000227232.5;transcript_id=ENST00000488147.1;gene_type=unprocessed_pseudogene;gene_name=WASH7P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.2-001;exon_number=10;exon_id=ENSE00001935574.1;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000000958.1;havana_transcript=OTTHUMT00000002839.1
chr1 HAVANA exon 14404 14501 . - . ID=exon:ENST00000488147.1:11;Parent=ENST00000488147.1;gene_id=ENSG00000227232.5;transcript_id=ENST00000488147.1;gene_type=unprocessed_pseudogene;gene_name=WASH7P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.2-001;exon_number=11;exon_id=ENSE00001843071.1;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000000958.1;havana_transcript=OTTHUMT00000002839.1
chr1 ENSEMBL gene 17369 17436 . - . ID=ENSG00000278267.1;gene_id=ENSG00000278267.1;gene_type=miRNA;gene_name=MIR6859-1;level=3
chr1 ENSEMBL transcript 17369 17436 . - . ID=ENST00000619216.1;Parent=ENSG00000278267.1;gene_id=ENSG00000278267.1;transcript_id=ENST00000619216.1;gene_type=miRNA;gene_name=MIR6859-1;transcript_type=miRNA;transcript_name=MIR6859-1-201;level=3;transcript_support_level=NA;tag=basic
chr1 ENSEMBL exon 17369 17436 . - . ID=exon:ENST00000619216.1:1;Parent=ENST00000619216.1;gene_id=ENSG00000278267.1;transcript_id=ENST00000619216.1;gene_type=miRNA;gene_name=MIR6859-1;transcript_type=miRNA;transcript_name=MIR6859-1-201;exon_number=1;exon_id=ENSE00003746039.1;level=3;transcript_support_level=NA;tag=basic
chr1 HAVANA gene 29554 31109 . + . ID=ENSG00000243485.5;gene_id=ENSG00000243485.5;gene_type=lincRNA;gene_name=RP11-34P13.3;level=2;tag=ncRNA_host;havana_gene=OTTHUMG00000000959.2
chr1 HAVANA transcript 29554 31097 . + . ID=ENST00000473358.1;Parent=ENSG00000243485.5;gene_id=ENSG00000243485.5;transcript_id=ENST00000473358.1;gene_type=lincRNA;gene_name=RP11-34P13.3;transcript_type=lincRNA;transcript_name=RP11-34P13.3-001;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,dotter_confirmed,basic;havana_gene=OTTHUMG00000000959.2;havana_transcript=OTTHUMT00000002840.1
chr1 HAVANA exon 29554 30039 . + . ID=exon:ENST00000473358.1:1;Parent=ENST00000473358.1;gene_id=ENSG00000243485.5;transcript_id=ENST00000473358.1;gene_type=lincRNA;gene_name=RP11-34P13.3;transcript_type=lincRNA;transcript_name=RP11-34P13.3-001;exon_number=1;exon_id=ENSE00001947070.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,dotter_confirmed,basic;havana_gene=OTTHUMG00000000959.2;havana_transcript=OTTHUMT00000002840.1
chr1 HAVANA exon 30564 30667 . + . ID=exon:ENST00000473358.1:2;Parent=ENST00000473358.1;gene_id=ENSG00000243485.5;transcript_id=ENST00000473358.1;gene_type=lincRNA;gene_name=RP11-34P13.3;transcript_type=lincRNA;transcript_name=RP11-34P13.3-001;exon_number=2;exon_id=ENSE00001922571.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,dotter_confirmed,basic;havana_gene=OTTHUMG00000000959.2;havana_transcript=OTTHUMT00000002840.1
chr1 HAVANA exon 30976 31097 . + . ID=exon:ENST00000473358.1:3;Parent=ENST00000473358.1;gene_id=ENSG00000243485.5;transcript_id=ENST00000473358.1;gene_type=lincRNA;gene_name=RP11-34P13.3;transcript_type=lincRNA;transcript_name=RP11-34P13.3-001;exon_number=3;exon_id=ENSE00001827679.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,dotter_confirmed,basic;havana_gene=OTTHUMG00000000959.2;havana_transcript=OTTHUMT00000002840.1
chr1 HAVANA transcript 30267 31109 . + . ID=ENST00000469289.1;Parent=ENSG00000243485.5;gene_id=ENSG00000243485.5;transcript_id=ENST00000469289.1;gene_type=lincRNA;gene_name=RP11-34P13.3;transcript_type=lincRNA;transcript_name=RP11-34P13.3-002;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,basic;havana_gene=OTTHUMG00000000959.2;havana_transcript=OTTHUMT00000002841.2
chr1 HAVANA exon 30267 30667 . + . ID=exon:ENST00000469289.1:1;Parent=ENST00000469289.1;gene_id=ENSG00000243485.5;transcript_id=ENST00000469289.1;gene_type=lincRNA;gene_name=RP11-34P13.3;transcript_type=lincRNA;transcript_name=RP11-34P13.3-002;exon_number=1;exon_id=ENSE00001841699.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,basic;havana_gene=OTTHUMG00000000959.2;havana_transcript=OTTHUMT00000002841.2
chr1 HAVANA exon 30976 31109 . + . ID=exon:ENST00000469289.1:2;Parent=ENST00000469289.1;gene_id=ENSG00000243485.5;transcript_id=ENST00000469289.1;gene_type=lincRNA;gene_name=RP11-34P13.3;transcript_type=lincRNA;transcript_name=RP11-34P13.3-002;exon_number=2;exon_id=ENSE00001890064.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,basic;havana_gene=OTTHUMG00000000959.2;havana_transcript=OTTHUMT00000002841.2
chr1 ENSEMBL gene 30366 30503 . + . ID=ENSG00000284332.1;gene_id=ENSG00000284332.1;gene_type=miRNA;gene_name=MIR1302-2;level=3
chr1 ENSEMBL transcript 30366 30503 . + . ID=ENST00000607096.1;Parent=ENSG00000284332.1;gene_id=ENSG00000284332.1;transcript_id=ENST00000607096.1;gene_type=miRNA;gene_name=MIR1302-2;transcript_type=miRNA;transcript_name=MIR1302-2-201;level=3;transcript_support_level=NA;tag=basic
chr1 ENSEMBL exon 30366 30503 . + . ID=exon:ENST00000607096.1:1;Parent=ENST00000607096.1;gene_id=ENSG00000284332.1;transcript_id=ENST00000607096.1;gene_type=miRNA;gene_name=MIR1302-2;transcript_type=miRNA;transcript_name=MIR1302-2-201;exon_number=1;exon_id=ENSE00003695741.1;level=3;transcript_support_level=NA;tag=basic
chr1 HAVANA gene 34554 36081 . - . ID=ENSG00000237613.2;gene_id=ENSG00000237613.2;gene_type=lincRNA;gene_name=FAM138A;level=2;havana_gene=OTTHUMG00000000960.1
chr1 HAVANA transcript 34554 36081 . - . ID=ENST00000417324.1;Parent=ENSG00000237613.2;gene_id=ENSG00000237613.2;transcript_id=ENST00000417324.1;gene_type=lincRNA;gene_name=FAM138A;transcript_type=lincRNA;transcript_name=RP11-34P13.4-001;level=2;transcript_support_level=1;tag=basic;havana_gene=OTTHUMG00000000960.1;havana_transcript=OTTHUMT00000002842.1
chr1 HAVANA exon 35721 36081 . - . ID=exon:ENST00000417324.1:1;Parent=ENST00000417324.1;gene_id=ENSG00000237613.2;transcript_id=ENST00000417324.1;gene_type=lincRNA;gene_name=FAM138A;transcript_type=lincRNA;transcript_name=RP11-34P13.4-001;exon_number=1;exon_id=ENSE00001656588.1;level=2;transcript_support_level=1;tag=basic;havana_gene=OTTHUMG00000000960.1;havana_transcript=OTTHUMT00000002842.1
chr1 HAVANA exon 35277 35481 . - . ID=exon:ENST00000417324.1:2;Parent=ENST00000417324.1;gene_id=ENSG00000237613.2;transcript_id=ENST00000417324.1;gene_type=lincRNA;gene_name=FAM138A;transcript_type=lincRNA;transcript_name=RP11-34P13.4-001;exon_number=2;exon_id=ENSE00001669267.1;level=2;transcript_support_level=1;tag=basic;havana_gene=OTTHUMG00000000960.1;havana_transcript=OTTHUMT00000002842.1
chr1 HAVANA exon 34554 35174 . - . ID=exon:ENST00000417324.1:3;Parent=ENST00000417324.1;gene_id=ENSG00000237613.2;transcript_id=ENST00000417324.1;gene_type=lincRNA;gene_name=FAM138A;transcript_type=lincRNA;transcript_name=RP11-34P13.4-001;exon_number=3;exon_id=ENSE00001727627.1;level=2;transcript_support_level=1;tag=basic;havana_gene=OTTHUMG00000000960.1;havana_transcript=OTTHUMT00000002842.1
chr1 HAVANA transcript 35245 36073 . - . ID=ENST00000461467.1;Parent=ENSG00000237613.2;gene_id=ENSG00000237613.2;transcript_id=ENST00000461467.1;gene_type=lincRNA;gene_name=FAM138A;transcript_type=lincRNA;transcript_name=RP11-34P13.4-002;level=2;transcript_support_level=3;havana_gene=OTTHUMG00000000960.1;havana_transcript=OTTHUMT00000002843.1
chr1 HAVANA exon 35721 36073 . - . ID=exon:ENST00000461467.1:1;Parent=ENST00000461467.1;gene_id=ENSG00000237613.2;transcript_id=ENST00000461467.1;gene_type=lincRNA;gene_name=FAM138A;transcript_type=lincRNA;transcript_name=RP11-34P13.4-002;exon_number=1;exon_id=ENSE00001618781.2;level=2;transcript_support_level=3;havana_gene=OTTHUMG00000000960.1;havana_transcript=OTTHUMT00000002843.1
chr1 HAVANA exon 35245 35481 . - . ID=exon:ENST00000461467.1:2;Parent=ENST00000461467.1;gene_id=ENSG00000237613.2;transcript_id=ENST00000461467.1;gene_type=lincRNA;gene_name=FAM138A;transcript_type=lincRNA;transcript_name=RP11-34P13.4-002;exon_number=2;exon_id=ENSE00001874421.1;level=2;transcript_support_level=3;havana_gene=OTTHUMG00000000960.1;havana_transcript=OTTHUMT00000002843.1
chr1 HAVANA gene 52473 53312 . + . ID=ENSG00000268020.3;gene_id=ENSG00000268020.3;gene_type=unprocessed_pseudogene;gene_name=OR4G4P;level=2;havana_gene=OTTHUMG00000185779.1
chr1 HAVANA transcript 52473 53312 . + . ID=ENST00000606857.1;Parent=ENSG00000268020.3;gene_id=ENSG00000268020.3;transcript_id=ENST00000606857.1;gene_type=unprocessed_pseudogene;gene_name=OR4G4P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.17-001;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000185779.1;havana_transcript=OTTHUMT00000471235.1
chr1 HAVANA exon 52473 53312 . + . ID=exon:ENST00000606857.1:1;Parent=ENST00000606857.1;gene_id=ENSG00000268020.3;transcript_id=ENST00000606857.1;gene_type=unprocessed_pseudogene;gene_name=OR4G4P;transcript_type=unprocessed_pseudogene;transcript_name=RP11-34P13.17-001;exon_number=1;exon_id=ENSE00003698237.1;level=2;transcript_support_level=NA;ont=PGO:0000005;tag=basic;havana_gene=OTTHUMG00000185779.1;havana_transcript=OTTHUMT00000471235.1
chr1 HAVANA gene 57598 64116 . + . ID=ENSG00000240361.2;gene_id=ENSG00000240361.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=OR4G11P;level=2;havana_gene=OTTHUMG00000001095.3
chr1 HAVANA transcript 57598 64116 . + . ID=ENST00000642116.1;Parent=ENSG00000240361.2;gene_id=ENSG00000240361.2;transcript_id=ENST00000642116.1;gene_type=transcribed_unprocessed_pseudogene;gene_name=OR4G11P;transcript_type=processed_transcript;transcript_name=RP11-34P13.6-002;level=2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001095.3;havana_transcript=OTTHUMT00000492680.1
chr1 HAVANA exon 57598 57653 . + . ID=exon:ENST00000642116.1:1;Parent=ENST00000642116.1;gene_id=ENSG00000240361.2;transcript_id=ENST00000642116.1;gene_type=transcribed_unprocessed_pseudogene;gene_name=OR4G11P;transcript_type=processed_transcript;transcript_name=RP11-34P13.6-002;exon_number=1;exon_id=ENSE00003812686.1;level=2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001095.3;havana_transcript=OTTHUMT00000492680.1
chr1 HAVANA exon 58700 58856 . + . ID=exon:ENST00000642116.1:2;Parent=ENST00000642116.1;gene_id=ENSG00000240361.2;transcript_id=ENST00000642116.1;gene_type=transcribed_unprocessed_pseudogene;gene_name=OR4G11P;transcript_type=processed_transcript;transcript_name=RP11-34P13.6-002;exon_number=2;exon_id=ENSE00003812505.1;level=2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001095.3;havana_transcript=OTTHUMT00000492680.1
chr1 HAVANA exon 62916 64116 . + . ID=exon:ENST00000642116.1:3;Parent=ENST00000642116.1;gene_id=ENSG00000240361.2;transcript_id=ENST00000642116.1;gene_type=transcribed_unprocessed_pseudogene;gene_name=OR4G11P;transcript_type=processed_transcript;transcript_name=RP11-34P13.6-002;exon_number=3;exon_id=ENSE00003811818.1;level=2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001095.3;havana_transcript=OTTHUMT00000492680.1
chr1 HAVANA transcript 62949 63887 . + . ID=ENST00000492842.2;Parent=ENSG00000240361.2;gene_id=ENSG00000240361.2;transcript_id=ENST00000492842.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=OR4G11P;transcript_type=transcribed_unprocessed_pseudogene;transcript_name=RP11-34P13.6-001;level=2;transcript_support_level=NA;ont=PGO:0000005,PGO:0000019;tag=basic;havana_gene=OTTHUMG00000001095.3;havana_transcript=OTTHUMT00000003224.3
chr1 HAVANA exon 62949 63887 . + . ID=exon:ENST00000492842.2:1;Parent=ENST00000492842.2;gene_id=ENSG00000240361.2;transcript_id=ENST00000492842.2;gene_type=transcribed_unprocessed_pseudogene;gene_name=OR4G11P;transcript_type=transcribed_unprocessed_pseudogene;transcript_name=RP11-34P13.6-001;exon_number=1;exon_id=ENSE00001830178.2;level=2;transcript_support_level=NA;ont=PGO:0000005,PGO:0000019;tag=basic;havana_gene=OTTHUMG00000001095.3;havana_transcript=OTTHUMT00000003224.3
chr1 HAVANA gene 65419 71585 . + . ID=ENSG00000186092.6;gene_id=ENSG00000186092.6;gene_type=protein_coding;gene_name=OR4F5;level=2;havana_gene=OTTHUMG00000001094.4
chr1 HAVANA transcript 65419 71585 . + . ID=ENST00000641515.2;Parent=ENSG00000186092.6;gene_id=ENSG00000186092.6;transcript_id=ENST00000641515.2;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=RP11-34P13.5-001;level=2;protein_id=ENSP00000493376.2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001094.4;havana_transcript=OTTHUMT00000003223.4
chr1 HAVANA exon 65419 65433 . + . ID=exon:ENST00000641515.2:1;Parent=ENST00000641515.2;gene_id=ENSG00000186092.6;transcript_id=ENST00000641515.2;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=RP11-34P13.5-001;exon_number=1;exon_id=ENSE00003812156.1;level=2;protein_id=ENSP00000493376.2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001094.4;havana_transcript=OTTHUMT00000003223.4
chr1 HAVANA exon 65520 65573 . + . ID=exon:ENST00000641515.2:2;Parent=ENST00000641515.2;gene_id=ENSG00000186092.6;transcript_id=ENST00000641515.2;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=RP11-34P13.5-001;exon_number=2;exon_id=ENSE00003813641.1;level=2;protein_id=ENSP00000493376.2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001094.4;havana_transcript=OTTHUMT00000003223.4
chr1 HAVANA CDS 65565 65573 . + 0 ID=CDS:ENST00000641515.2;Parent=ENST00000641515.2;gene_id=ENSG00000186092.6;transcript_id=ENST00000641515.2;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=RP11-34P13.5-001;exon_number=2;exon_id=ENSE00003813641.1;level=2;protein_id=ENSP00000493376.2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001094.4;havana_transcript=OTTHUMT00000003223.4
chr1 HAVANA start_codon 65565 65567 . + 0 ID=start_codon:ENST00000641515.2;Parent=ENST00000641515.2;gene_id=ENSG00000186092.6;transcript_id=ENST00000641515.2;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=RP11-34P13.5-001;exon_number=2;exon_id=ENSE00003813641.1;level=2;protein_id=ENSP00000493376.2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001094.4;havana_transcript=OTTHUMT00000003223.4
chr1 HAVANA exon 69037 71585 . + . ID=exon:ENST00000641515.2:3;Parent=ENST00000641515.2;gene_id=ENSG00000186092.6;transcript_id=ENST00000641515.2;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=RP11-34P13.5-001;exon_number=3;exon_id=ENSE00003813949.1;level=2;protein_id=ENSP00000493376.2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001094.4;havana_transcript=OTTHUMT00000003223.4
chr1 HAVANA CDS 69037 70008 . + 0 ID=CDS:ENST00000641515.2;Parent=ENST00000641515.2;gene_id=ENSG00000186092.6;transcript_id=ENST00000641515.2;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=RP11-34P13.5-001;exon_number=3;exon_id=ENSE00003813949.1;level=2;protein_id=ENSP00000493376.2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001094.4;havana_transcript=OTTHUMT00000003223.4
chr1 HAVANA stop_codon 70006 70008 . + 0 ID=stop_codon:ENST00000641515.2;Parent=ENST00000641515.2;gene_id=ENSG00000186092.6;transcript_id=ENST00000641515.2;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=RP11-34P13.5-001;exon_number=3;exon_id=ENSE00003813949.1;level=2;protein_id=ENSP00000493376.2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001094.4;havana_transcript=OTTHUMT00000003223.4
chr1 HAVANA five_prime_UTR 65419 65433 . + . ID=UTR5:ENST00000641515.2;Parent=ENST00000641515.2;gene_id=ENSG00000186092.6;transcript_id=ENST00000641515.2;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=RP11-34P13.5-001;exon_number=1;exon_id=ENSE00003812156.1;level=2;protein_id=ENSP00000493376.2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001094.4;havana_transcript=OTTHUMT00000003223.4
chr1 HAVANA five_prime_UTR 65520 65564 . + . ID=UTR5:ENST00000641515.2;Parent=ENST00000641515.2;gene_id=ENSG00000186092.6;transcript_id=ENST00000641515.2;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=RP11-34P13.5-001;exon_number=2;exon_id=ENSE00003813641.1;level=2;protein_id=ENSP00000493376.2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001094.4;havana_transcript=OTTHUMT00000003223.4
chr1 HAVANA three_prime_UTR 70009 71585 . + . ID=UTR3:ENST00000641515.2;Parent=ENST00000641515.2;gene_id=ENSG00000186092.6;transcript_id=ENST00000641515.2;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=RP11-34P13.5-001;exon_number=3;exon_id=ENSE00003813949.1;level=2;protein_id=ENSP00000493376.2;tag=RNA_Seq_supported_partial,basic;havana_gene=OTTHUMG00000001094.4;havana_transcript=OTTHUMT00000003223.4
chr1 ENSEMBL transcript 69055 70108 . + . ID=ENST00000335137.4;Parent=ENSG00000186092.6;gene_id=ENSG00000186092.6;transcript_id=ENST00000335137.4;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=OR4F5-201;level=3;protein_id=ENSP00000334393.3;transcript_support_level=NA;tag=basic,appris_principal_1,CCDS;ccdsid=CCDS30547.1;havana_gene=OTTHUMG00000001094.4
chr1 ENSEMBL exon 69055 70108 . + . ID=exon:ENST00000335137.4:1;Parent=ENST00000335137.4;gene_id=ENSG00000186092.6;transcript_id=ENST00000335137.4;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=OR4F5-201;exon_number=1;exon_id=ENSE00002319515.2;level=3;protein_id=ENSP00000334393.3;transcript_support_level=NA;tag=basic,appris_principal_1,CCDS;ccdsid=CCDS30547.1;havana_gene=OTTHUMG00000001094.4
chr1 ENSEMBL CDS 69091 70008 . + 0 ID=CDS:ENST00000335137.4;Parent=ENST00000335137.4;gene_id=ENSG00000186092.6;transcript_id=ENST00000335137.4;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=OR4F5-201;exon_number=1;exon_id=ENSE00002319515.2;level=3;protein_id=ENSP00000334393.3;transcript_support_level=NA;tag=basic,appris_principal_1,CCDS;ccdsid=CCDS30547.1;havana_gene=OTTHUMG00000001094.4
chr1 ENSEMBL start_codon 69091 69093 . + 0 ID=start_codon:ENST00000335137.4;Parent=ENST00000335137.4;gene_id=ENSG00000186092.6;transcript_id=ENST00000335137.4;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=OR4F5-201;exon_number=1;exon_id=ENSE00002319515.2;level=3;protein_id=ENSP00000334393.3;transcript_support_level=NA;tag=basic,appris_principal_1,CCDS;ccdsid=CCDS30547.1;havana_gene=OTTHUMG00000001094.4
chr1 ENSEMBL stop_codon 70006 70008 . + 0 ID=stop_codon:ENST00000335137.4;Parent=ENST00000335137.4;gene_id=ENSG00000186092.6;transcript_id=ENST00000335137.4;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=OR4F5-201;exon_number=1;exon_id=ENSE00002319515.2;level=3;protein_id=ENSP00000334393.3;transcript_support_level=NA;tag=basic,appris_principal_1,CCDS;ccdsid=CCDS30547.1;havana_gene=OTTHUMG00000001094.4
chr1 ENSEMBL five_prime_UTR 69055 69090 . + . ID=UTR5:ENST00000335137.4;Parent=ENST00000335137.4;gene_id=ENSG00000186092.6;transcript_id=ENST00000335137.4;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=OR4F5-201;exon_number=1;exon_id=ENSE00002319515.2;level=3;protein_id=ENSP00000334393.3;transcript_support_level=NA;tag=basic,appris_principal_1,CCDS;ccdsid=CCDS30547.1;havana_gene=OTTHUMG00000001094.4
chr1 ENSEMBL three_prime_UTR 70009 70108 . + . ID=UTR3:ENST00000335137.4;Parent=ENST00000335137.4;gene_id=ENSG00000186092.6;transcript_id=ENST00000335137.4;gene_type=protein_coding;gene_name=OR4F5;transcript_type=protein_coding;transcript_name=OR4F5-201;exon_number=1;exon_id=ENSE00002319515.2;level=3;protein_id=ENSP00000334393.3;transcript_support_level=NA;tag=basic,appris_principal_1,CCDS;ccdsid=CCDS30547.1;havana_gene=OTTHUMG00000001094.4
chr1 HAVANA gene 89295 133723 . - . ID=ENSG00000238009.6;gene_id=ENSG00000238009.6;gene_type=lincRNA;gene_name=RP11-34P13.7;level=2;tag=overlapping_locus;havana_gene=OTTHUMG00000001096.2
chr1 HAVANA transcript 89295 120932 . - . ID=ENST00000466430.5;Parent=ENSG00000238009.6;gene_id=ENSG00000238009.6;transcript_id=ENST00000466430.5;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-001;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,basic;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003225.1
chr1 HAVANA exon 120775 120932 . - . ID=exon:ENST00000466430.5:1;Parent=ENST00000466430.5;gene_id=ENSG00000238009.6;transcript_id=ENST00000466430.5;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-001;exon_number=1;exon_id=ENSE00001606755.2;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,basic;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003225.1
chr1 HAVANA exon 112700 112804 . - . ID=exon:ENST00000466430.5:2;Parent=ENST00000466430.5;gene_id=ENSG00000238009.6;transcript_id=ENST00000466430.5;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-001;exon_number=2;exon_id=ENSE00001957285.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,basic;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003225.1
chr1 HAVANA exon 92091 92240 . - . ID=exon:ENST00000466430.5:3;Parent=ENST00000466430.5;gene_id=ENSG00000238009.6;transcript_id=ENST00000466430.5;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-001;exon_number=3;exon_id=ENSE00001944529.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,basic;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003225.1
chr1 HAVANA exon 89295 91629 . - . ID=exon:ENST00000466430.5:4;Parent=ENST00000466430.5;gene_id=ENSG00000238009.6;transcript_id=ENST00000466430.5;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-001;exon_number=4;exon_id=ENSE00001846804.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,basic;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003225.1
chr1 HAVANA transcript 92230 129217 . - . ID=ENST00000477740.5;Parent=ENSG00000238009.6;gene_id=ENSG00000238009.6;transcript_id=ENST00000477740.5;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-003;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003688.1
chr1 HAVANA exon 129055 129217 . - . ID=exon:ENST00000477740.5:1;Parent=ENST00000477740.5;gene_id=ENSG00000238009.6;transcript_id=ENST00000477740.5;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-003;exon_number=1;exon_id=ENSE00001919246.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003688.1
chr1 HAVANA exon 120721 120932 . - . ID=exon:ENST00000477740.5:2;Parent=ENST00000477740.5;gene_id=ENSG00000238009.6;transcript_id=ENST00000477740.5;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-003;exon_number=2;exon_id=ENSE00001171005.3;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003688.1
chr1 HAVANA exon 112700 112804 . - . ID=exon:ENST00000477740.5:3;Parent=ENST00000477740.5;gene_id=ENSG00000238009.6;transcript_id=ENST00000477740.5;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-003;exon_number=3;exon_id=ENSE00001957285.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003688.1
chr1 HAVANA exon 92230 92240 . - . ID=exon:ENST00000477740.5:4;Parent=ENST00000477740.5;gene_id=ENSG00000238009.6;transcript_id=ENST00000477740.5;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-003;exon_number=4;exon_id=ENSE00001896976.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003688.1
chr1 HAVANA transcript 110953 129173 . - . ID=ENST00000471248.1;Parent=ENSG00000238009.6;gene_id=ENSG00000238009.6;transcript_id=ENST00000471248.1;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-002;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,dotter_confirmed;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003687.1
chr1 HAVANA exon 129055 129173 . - . ID=exon:ENST00000471248.1:1;Parent=ENST00000471248.1;gene_id=ENSG00000238009.6;transcript_id=ENST00000471248.1;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-002;exon_number=1;exon_id=ENSE00001934975.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,dotter_confirmed;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003687.1
chr1 HAVANA exon 112700 112804 . - . ID=exon:ENST00000471248.1:2;Parent=ENST00000471248.1;gene_id=ENSG00000238009.6;transcript_id=ENST00000471248.1;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-002;exon_number=2;exon_id=ENSE00001957285.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,dotter_confirmed;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003687.1
chr1 HAVANA exon 110953 111357 . - . ID=exon:ENST00000471248.1:3;Parent=ENST00000471248.1;gene_id=ENSG00000238009.6;transcript_id=ENST00000471248.1;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=RP11-34P13.7-002;exon_number=3;exon_id=ENSE00001879696.1;level=2;transcript_support_level=5;tag=not_best_in_genome_evidence,dotter_confirmed;havana_gene=OTTHUMG00000001096.2;havana_transcript=OTTHUMT00000003687.1
chr1 ENSEMBL transcript 120725 133723 . - . ID=ENST00000610542.1;Parent=ENSG00000238009.6;gene_id=ENSG00000238009.6;transcript_id=ENST00000610542.1;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=AL627309.1-205;level=3;transcript_support_level=5;tag=basic;havana_gene=OTTHUMG00000001096.2
chr1 ENSEMBL exon 133374 133723 . - . ID=exon:ENST00000610542.1:1;Parent=ENST00000610542.1;gene_id=ENSG00000238009.6;transcript_id=ENST00000610542.1;gene_type=lincRNA;gene_name=RP11-34P13.7;transcript_type=lincRNA;transcript_name=AL627309.1-205;exon_number=1;exon_id=ENSE00003748456.1;level=3;transcript_support_level=5;tag=basic;havana_gene=OTTHUMG00000001096.2
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