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# Install and update required packages
apt-get -y update
apt-get -y upgrade
apt-get install -y build-essential \
g++ \
python \
python-dev \
python-setuptools \
nfs-kernel-server \
nfs-common \
rpcbind \
upstart \
cython \
cython3 \
git \
ipython \
ipython3 \
libgomp1 \
libopenmpi-dev \
libtrilinos-zoltan-dev \
mayavi2 \
python \
python-execnet \
python-h5py \
python-mako \
python-matplotlib \
python-mock \
python-mpi4py \
python-nose \
python-numpy \
python-pip \
python-psutil \
python-qt4 \
python-unittest2 \
python3 \
python3-h5py \
python3-mako \
python3-matplotlib \
python3-mpi4py \
python3-nose \
python3-numpy \
python3-pip \
python3-psutil \
sudo \
tox \
vim \
wget \
virtualenv \
&& rm -rf /var/lib/apt/lists/*
# Starcluster seems to look for /etc/init.d/nfs
# Create a symbolic link to point to the right file
ln -s /etc/init.d/nfs-kernel-server /etc/init.d/nfs
ln -s /lib/systemd/system/nfs-kernel-server.service /lib/systemd/system/nfs.service
# rpcbind is shipped instead of portmap on recent Debian installations
# http://star.mit.edu/cluster/mlarchives/2545.html
echo 'exit 0' > /etc/init.d/portmap
chmod +x /etc/init.d/portmap
# Download sge
curl -L https://github.com/brunogrande/starcluster-ami-config/blob/master/sge.tar.gz?raw=true | sudo tar -xz -C /opt/
# Create users
adduser --disabled-password --gecos '' pysph && \
adduser pysph sudo && \
echo '%sudo ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers
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