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import matplotlib.pyplot as plt
import matplotlib.image as mpimg
from agilent_format import agilentMosaicIFG
PLOTS = True
ATTRS = False
filename = ["var/2018-01-02 Small Test File/5_mosaic_noimage_agg1024/5_mosaic_agg1024.dmt"]
for f in filename:
aifg = agilentMosaicIFG(f)
print(aifg.data.shape)
if PLOTS:
img = aifg.data.sum(axis=2)
print(img.shape)
imgplot = plt.imshow(img, origin='lower')
plt.show()
plt.plot(range(0, aifg.data.shape[2]), aifg.data[0,0,:])
plt.plot(range(0, aifg.data.shape[2]), aifg.data[2,2,:])
plt.plot(range(0, aifg.data.shape[2]), aifg.data[0,3,:])
plt.show()
assert aifg.data.shape == (8, 4, 311)
assert aifg.info['Npts'] == 311
assert aifg.info['StartPt'] == -68
assert aifg.info['PtSep'] == float(0.00012659827227975054)
assert aifg.info['Rapid Stingray']['Effective Laser Wavenumber'] == "15798.0039"
assert aifg.info['Rapid Stingray']['Resolution'] == "32"
try:
assert aifg.info['Rapid Stingray']['Symmetry'] == "ASYM"
except KeyError:
print("No \'Symmetry\' key in " + aifg.filename)
try:
assert aifg.info['Rapid Stingray']['Under Sampling Ratio'] == "4"
except KeyError:
print("No \'Under Sampling Ratio\' key in " + aifg.filename)
assert aifg.info['PixelAggregationSize'] == 32
if ATTRS:
for k,v in aifg.info.items():
if k == "Rapid Stingray":
for k, v, in v.items():
print(k,v, type(v))
else:
print(k,v, type(v))
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