File: NEWS.rst

package info (click to toggle)
python-airr 1.2.1-2
  • links: PTS, VCS
  • area: main
  • in suites: buster
  • size: 272 kB
  • sloc: python: 1,470; sh: 19; makefile: 10
file content (34 lines) | stat: -rw-r--r-- 1,791 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
Version 1.2.1:  October 5, 2018
--------------------------------------------------------------------------------

+ Fixed a bug in the python reference library causing start coordinate values
  to be empty in some cases when writing data.

Version 1.2.0:  August 17, 2018
--------------------------------------------------------------------------------

+ Updated schema set to v1.2.
+ Several improvements to the ``validate_rearrangement`` function.
+ Changed behavior of all `airr.interface` functions to accept a file path
  (string) to a single Rearrangement TSV, instead of requiring a file handle as
  input.
+ Added ``base`` argument to ``RearrangementReader`` and ``RearrangementWriter``
  to support optional conversion of 1-based closed intervals in the TSV to python-style
  0-based half-open intervals. Defaults to conversion.
+ Added the custom exception ``ValidationError`` for handling validation checks.
+ Added the ``validate`` argument to ``RearrangementReader`` which will raise
  a ``ValidationError`` exception when reading files with missing required
  fields or invalid values for known field types.
+ Added ``validate`` argument to all type conversion methods in ``Schema``,
  which will now raise a ``ValidationError`` exception for value that cannot be
  converted when set to ``True``. When set ``False`` (default), the previous
  behavior of assigning ``None`` as the converted value is retained.
+ Added ``validate_header`` and ``validate_row`` methods to ``Schema`` and
  removed validations methods from ``RearrangementReader``.
+ Removed automatic closure of file handle upon reaching the iterator end in
  ``RearrangementReader``.

Version 1.1.0:  May 1, 2018
--------------------------------------------------------------------------------

Initial release.