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"""
Unit tests for interface
"""
# System imports
import os
import time
import unittest
# Load imports
from airr.io import *
# Paths
test_path = os.path.dirname(os.path.realpath(__file__))
data_path = os.path.join(test_path, 'data')
class TestRearrangementReader(unittest.TestCase):
def setUp(self):
print('-------> %s()' % self.id())
# Test data
self.data_good = os.path.join(data_path, 'good_rearrangement.tsv')
self.data_bad = os.path.join(data_path, 'bad_rearrangement.tsv')
self.data_extra = os.path.join(data_path, 'extra_rearrangement.tsv')
# Start timer
self.start = time.time()
def tearDown(self):
t = time.time() - self.start
print('<- %.3f %s()' % (t, self.id()))
# @unittest.skip('-> validate(): skipped\n')
def test_validate(self):
# Good data
try:
with open(self.data_good, 'r') as handle:
reader = RearrangementReader(handle, validate=True)
for r in reader:
pass
except:
self.assertTrue(False, 'validate(): good data failed')
# Bad data
try:
with open(self.data_bad, 'r') as handle:
reader = RearrangementReader(handle, validate=True)
for r in reader:
pass
self.assertFalse(True, 'validate(): bad data failed')
except ValidationError:
pass
except Exception as inst:
print(type(inst))
raise inst
# Extra data
try:
with open(self.data_extra, 'r') as handle:
reader = RearrangementReader(handle, validate=False)
for r in reader:
pass
self.assertFalse(True, 'validate(): extra data failed')
except ValueError:
pass
except Exception as inst:
print(type(inst))
raise inst
if __name__ == '__main__':
unittest.main()
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