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Author: Andreas Tille <tille@debian.org>
Last-Update: Thu, 09 Dec 2021 12:42:27 +0100
Description: The example doc tries to import some data from scanpy which is not yet packaged
Thus the test would fail and the test is removed here
--- a/src/anndata/experimental/multi_files/_anncollection.py
+++ b/src/anndata/experimental/multi_files/_anncollection.py
@@ -656,29 +656,6 @@ class AnnCollection(_ConcatViewMixin, _I
is not important, for example, when using them for stochastic gradient descent.
In this case the performance of subsetting can be a bit better.
- Examples
- ----------
- >>> from scanpy.datasets import pbmc68k_reduced, pbmc3k_processed
- >>> adata1, adata2 = pbmc68k_reduced(), pbmc3k_processed()
- >>> adata1.shape
- (700, 765)
- >>> adata2.shape
- (2638, 1838)
- >>> dc = AnnCollection([adata1, adata2], join_vars='inner')
- >>> dc
- AnnCollection object with n_obs × n_vars = 3338 × 208
- constructed from 2 AnnData objects
- view of obsm: 'X_pca', 'X_umap'
- obs: 'n_genes', 'percent_mito', 'n_counts', 'louvain'
- >>> batch = dc[100:200] # AnnCollectionView
- >>> batch
- AnnCollectionView object with n_obs × n_vars = 100 × 208
- obsm: 'X_pca', 'X_umap'
- obs: 'n_genes', 'percent_mito', 'n_counts', 'louvain'
- >>> batch.X.shape
- (100, 208)
- >>> len(batch.obs['louvain'])
- 100
"""
@old_positionals(
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