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import sys
if sys.version_info < (3, 6):
sys.exit("anndata requires Python >= 3.6")
from pathlib import Path
from setuptools import setup, find_namespace_packages
try:
import pytoml
except ImportError:
sys.exit("Please use `pip install .` or install pytoml first.")
proj = pytoml.loads(Path("pyproject.toml").read_text())
metadata = proj["tool"]["anndata"]
setup(
name="anndata",
use_scm_version=True,
setup_requires=["setuptools_scm"],
description="Annotated Data.",
long_description=Path("README.rst").read_text("utf-8"),
url="http://github.com/theislab/anndata",
author=metadata["author"],
author_email=metadata["author-email"],
license="BSD-3-Clause",
install_requires=[
l.strip() for l in Path("requirements.txt").read_text("utf-8").splitlines()
],
extras_require=dict(
dev=["setuptools_scm", "pytoml", "black>=20.8b1"],
doc=[
# Sphinx 2 has nicer looking sections
"sphinx>=2.0.1",
"sphinx-rtd-theme",
"sphinx-autodoc-typehints>=1.11.0",
"sphinx_issues",
"scanpydoc>=0.5",
'typing_extensions; python_version < "3.8"',
],
test=[
"loompy>=3.0.5",
"pytest>=4.6",
"pytest-cov>=2.10",
"codacy-coverage",
"docutils", # for rst2html.py
"zarr",
"matplotlib",
"sklearn",
"xlrd",
"joblib",
"boltons",
"scanpy",
],
),
python_requires=">=3.6",
packages=find_namespace_packages(include=["anndata", "anndata.*"]),
include_package_data=True,
package_data={"": ["*.csv", "*.tsv", "*.xlsx"]},
zip_safe=False,
classifiers=[
"Environment :: Console",
"Framework :: Jupyter",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"Natural Language :: English",
"Operating System :: MacOS :: MacOS X",
"Operating System :: Microsoft :: Windows",
"Operating System :: POSIX :: Linux",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Scientific/Engineering :: Visualization",
],
)
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