1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275
|
import datetime
import fractions
import warnings
import pytest
import asdf
from asdf.exceptions import AsdfWarning, ValidationError
from asdf.extension import Converter, Extension, ExtensionProxy
from asdf.tags.core import HistoryEntry
from asdf.testing import helpers
def test_history():
ff = asdf.AsdfFile()
assert "history" not in ff.tree
ff.add_history_entry(
"This happened",
{"name": "my_tool", "homepage": "http://nowhere.org", "author": "John Doe", "version": "2.0"},
)
assert len(ff.tree["history"]["entries"]) == 1
with pytest.raises(ValidationError, match=r".* is not valid under any of the given schemas"):
ff.add_history_entry("That happened", {"author": "John Doe", "version": "2.0"})
assert len(ff.tree["history"]["entries"]) == 1
ff.add_history_entry("This other thing happened")
assert len(ff.tree["history"]["entries"]) == 2
assert isinstance(ff.tree["history"]["entries"][0]["time"], datetime.datetime)
def test_history_to_file(tmp_path):
file_path = tmp_path / "history.asdf"
with asdf.AsdfFile() as ff:
ff.add_history_entry(
"This happened",
{"name": "my_tool", "homepage": "http://nowhere.org", "author": "John Doe", "version": "2.0"},
)
ff.write_to(file_path)
with asdf.open(file_path) as ff:
assert "entries" in ff.tree["history"]
assert "extensions" in ff.tree["history"]
assert len(ff.tree["history"]["entries"]) == 1
entry = ff.tree["history"]["entries"][0]
assert entry["description"] == "This happened"
assert entry["software"]["name"] == "my_tool"
assert entry["software"]["version"] == "2.0"
# Test the history entry retrieval API
entries = ff.get_history_entries()
assert len(entries) == 1
assert isinstance(entries, list)
assert isinstance(entries[0], HistoryEntry)
assert entries[0]["description"] == "This happened"
assert entries[0]["software"]["name"] == "my_tool"
def test_old_history():
"""Make sure that old versions of the history format are still accepted"""
yaml = """
history:
- !core/history_entry-1.0.0
description: "Here's a test of old history entries"
software: !core/software-1.0.0
name: foo
version: 1.2.3
"""
buff = helpers.yaml_to_asdf(yaml)
with asdf.open(buff) as af:
assert len(af.tree["history"]) == 1
# Test the history entry retrieval API
entries = af.get_history_entries()
assert len(entries) == 1
assert isinstance(entries, list)
assert isinstance(entries[0], HistoryEntry)
assert entries[0]["description"] == "Here's a test of old history entries"
assert entries[0]["software"]["name"] == "foo"
def test_get_history_entries(tmp_path):
"""
Test edge cases for the get_history_entries API. Other cases tested above
"""
file_path = tmp_path / "empty.asdf"
with asdf.AsdfFile() as af:
af.write_to(file_path)
# Make sure this works when there is no history section at all
with asdf.open(file_path) as af:
assert len(af["history"]["extensions"]) > 0
assert len(af.get_history_entries()) == 0
def test_extension_metadata(tmp_path):
file_path = tmp_path / "extension.asdf"
ff = asdf.AsdfFile()
ff.write_to(file_path)
with asdf.open(file_path) as af:
assert len(af.tree["history"]["extensions"]) == 1
metadata = af.tree["history"]["extensions"][0]
assert metadata.extension_uri == "asdf://asdf-format.org/core/extensions/core-1.6.0"
assert metadata.extension_class == "asdf.extension._manifest.ManifestExtension"
assert metadata.software["name"] == "asdf"
assert metadata.software["version"] == asdf.__version__
def test_missing_extension_warning():
yaml = """
history:
extensions:
- !core/extension_metadata-1.0.0
extension_class: foo.bar.FooBar
software: !core/software-1.0.0
name: foo
version: 1.2.3
"""
buff = helpers.yaml_to_asdf(yaml)
with pytest.warns(AsdfWarning, match=r"File was created with extension class 'foo.bar.FooBar'"), asdf.open(buff):
pass
def test_extension_version_warning():
uri = "asdf://somewhere.org/extensions/foo-1.0.0"
package_name = "foo"
file_package_version = "2.0.0"
installed_package_version = "1.0.0"
class FooExtension:
extension_uri = uri
yaml = f"""
history:
extensions:
- !core/extension_metadata-1.0.0
extension_class: {FooExtension.__qualname__}
extension_uri: {uri}
software: !core/software-1.0.0
name: {package_name}
version: {file_package_version}
"""
buff = helpers.yaml_to_asdf(yaml)
with asdf.config_context() as cfg:
cfg.add_extension(ExtensionProxy(FooExtension(), package_name, installed_package_version))
with (
pytest.warns(
AsdfWarning,
match=f"older package \\({package_name}=={installed_package_version}\\)",
),
asdf.open(buff),
):
pass
buff.seek(0)
# Make sure suppressing the warning works too
with warnings.catch_warnings():
warnings.simplefilter("error")
with asdf.open(buff, ignore_missing_extensions=True):
pass
def test_strict_extension_check():
yaml = """
history:
extensions:
- !core/extension_metadata-1.0.0
extension_class: foo.bar.FooBar
software: !core/software-1.0.0
name: foo
version: 1.2.3
"""
buff = helpers.yaml_to_asdf(yaml)
with (
pytest.raises(
RuntimeError,
match=r"File was created with extension class .*, which is not currently installed",
),
asdf.open(buff, strict_extension_check=True),
):
pass
# Make sure to test for incompatibility with ignore_missing_extensions
buff.seek(0)
with (
pytest.raises(
ValueError,
match=r"'strict_extension_check' and 'ignore_missing_extensions' are incompatible options",
),
asdf.open(buff, strict_extension_check=True, ignore_missing_extensions=True),
):
pass
def test_metadata_with_custom_extension(tmp_path):
class FractionConverter(Converter):
tags = ["asdf://nowhere.org/tags/fraction-1.0.0"]
types = [fractions.Fraction]
def to_yaml_tree(self, obj, tag, ctx):
return [obj.numerator, obj.denominator]
def from_yaml_tree(self, node, tag, ctx):
return fractions.Fraction(node[0], node[1])
class FractionExtension(Extension):
extension_uri = "asdf://nowhere.org/extensions/fraction-1.0.0"
converters = [FractionConverter()]
tags = FractionConverter.tags
file_path = tmp_path / "custom_extension.asdf"
with asdf.config_context() as config:
config.add_extension(FractionExtension())
tree = {"fraction": fractions.Fraction(2, 3)}
with asdf.AsdfFile(tree) as ff:
ff.write_to(file_path)
# We expect metadata about both the Builtin extension and the custom one
with asdf.open(file_path) as af:
assert len(af["history"]["extensions"]) == 2
with (
pytest.warns(AsdfWarning, match=r"was created with extension"),
asdf.open(
file_path,
ignore_unrecognized_tag=True,
),
):
pass
file_path_2 = tmp_path / "no_extension.asdf"
# If we use the extension but we don't serialize any types that require it,
# no metadata about this extension should be added to the file
with asdf.config_context() as config:
config.add_extension(FractionExtension())
tree2 = {"x": list(range(10))}
with asdf.AsdfFile(tree2) as ff:
ff.write_to(file_path_2)
with asdf.open(file_path_2) as af:
assert len(af["history"]["extensions"]) == 1
with warnings.catch_warnings():
warnings.simplefilter("error")
with asdf.open(file_path_2):
pass
file_path_3 = tmp_path / "custom_extension2.asdf"
with asdf.config_context() as config:
config.add_extension(FractionExtension())
# Make sure that this works even when constructing the tree on-the-fly
with asdf.AsdfFile() as ff:
ff.tree["fraction"] = fractions.Fraction(4, 5)
ff.write_to(file_path_3)
with asdf.open(file_path_3) as af:
assert len(af["history"]["extensions"]) == 2
|