File: extra_molecules.py

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# flake8: noqa
"""
Database of molecules outside the G2_1 set

"""

molecule_names = ['Be2', 'C7NH5', 'BDA', 'biphenyl', 'C60']

data = {
    'Be2': {
        'description': "Diatomic Beryllium",
        'name': "Be_2",
        'enthalpy': 155.1,
        'ZPE': 1.0000,
        'thermal correction': 5.0600,
        'symbols': 'BeBe',
        'magmoms': None,
        'positions': [[0., 0., 1.0106],
                      [0., 0., -1.0106]]},
    'C7NH5': {
        'description': "Benzonitride",
        'name': "C_7NH_5",
        'symbols': 'C7NH5',
        'magmoms': None,
        'positions': [[-1.593581, -1.142601, 0.],
                      [-2.235542, 0.095555, 0.],
                      [-0.204885, -1.210726, 0.],
                      [0.549645, -0.025355, 0.],
                      [1.976332, -0.085321, 0.],
                      [-0.099258, 1.220706, 0.],
                      [-1.488628, 1.273345, 0.],
                      [3.136871, -0.128138, 0.],
                      [-2.177996, -2.060896, 0.],
                      [-3.323594, 0.141242, 0.],
                      [0.301694, -2.173705, 0.],
                      [0.488716, 2.136782, 0.],
                      [-1.987765, 2.240495, 0.]]},
    'BDA': {
        'description': "1,4-Benzodiamine",
        # aka p-Aminoaniline; p-Benzenediamine; p-Diaminobenzene;
        #     p-Phenylenediamine; Paraphenylen-diamine
        'name': "BDA",
        # PBE-gpaw relaxed
        'symbols': 'C6H4N2H4',
        'magmoms': None,
        'positions': [[0.004212, 1.406347, 0.061073],
                      [1.193490, 0.687096, 0.029481],
                      [1.190824, -0.690400, -0.028344],
                      [0.000295, -1.406191, -0.059503],
                      [-1.186974, -0.685668, -0.045413],
                      [-1.185376, 0.690203, 0.009452],
                      [2.147124, 1.219997, 0.064477],
                      [2.141593, -1.227477, -0.054266],
                      [-2.138408, -1.222814, -0.095050],
                      [-2.137740, 1.226930, 0.023036],
                      [-0.006314, 2.776024, 0.186278],
                      [-0.007340, -2.777839, -0.159936],
                      [0.844710, -3.256543, 0.110098],
                      [-0.854965, -3.253324, 0.130125],
                      [0.845826, 3.267270, -0.055549],
                      [-0.854666, 3.254654, -0.092676]]},
    'biphenyl': {
        'description': "Biphenyl",
        'name': "biphenyl",
        # PBE-gpaw relaxed
        'ionization energy': 8.16,
        'symbols': 'C6H5C6H5',
        'magmoms': None,
        'positions': [[-0.74081, -0.00000, -0.00003],
                      [-1.46261, -1.20370, -0.00993],
                      [-2.85531, -1.20350, -0.00663],
                      [-3.55761, -0.00000, -0.00003],
                      [-2.85531, 1.20350, 0.00667],
                      [-1.46261, 1.20370, 0.00997],
                      [-0.92071, -2.14850, 0.00967],
                      [-3.38981, -2.15110, -0.00083],
                      [-4.64571, -0.00000, -0.00003],
                      [-3.38981, 2.15110, 0.00077],
                      [-0.92071, 2.14850, -0.00963],
                      [3.55849, -0.00000, -0.00003],
                      [2.85509, -0.86640, -0.83553],
                      [1.46289, -0.87000, -0.83153],
                      [0.73969, -0.00000, -0.00003],
                      [1.46289, 0.87000, 0.83157],
                      [2.85509, 0.86640, 0.83547],
                      [4.64659, -0.00000, -0.00003],
                      [3.39189, -1.53770, -1.50253],
                      [0.91869, -1.53310, -1.50263],
                      [0.91869, 1.53310, 1.50267],
                      [3.39189, 1.53770, 1.50257]]},
    'C60': {
        'description': "Buckminsterfullerene, I*h symm.",
        'name': "C_{60}",
        # The Buckyball has two degrees of freedom, the C-C bond, and the C=C bond.
        # This is an LDA-gpaw relaxed structure with bond lengths 1.437 and 1.385.
        # Experimentally, the two bond lengths are 1.45 and 1.40 Angstrom.
        'symbols': 'C60',
        'magmoms': None,
        'positions': [[2.2101953, 0.5866631, 2.6669504],
                      [3.1076393, 0.1577008, 1.6300286],
                      [1.3284430, -0.3158939, 3.2363232],
                      [3.0908709, -1.1585005, 1.2014240],
                      [3.1879245, -1.4574599, -0.1997005],
                      [3.2214623, 1.2230966, 0.6739440],
                      [3.3161210, 0.9351586, -0.6765151],
                      [3.2984981, -0.4301142, -1.1204138],
                      [-0.4480842, 1.3591484, 3.2081020],
                      [0.4672056, 2.2949830, 2.6175264],
                      [-0.0256575, 0.0764219, 3.5086259],
                      [1.7727917, 1.9176584, 2.3529691],
                      [2.3954623, 2.3095689, 1.1189539],
                      [-0.2610195, 3.0820935, 1.6623117],
                      [0.3407726, 3.4592388, 0.4745968],
                      [1.6951171, 3.0692446, 0.1976623],
                      [-2.1258394, -0.8458853, 2.6700963],
                      [-2.5620990, 0.4855202, 2.3531715],
                      [-0.8781521, -1.0461985, 3.2367302],
                      [-1.7415096, 1.5679963, 2.6197333],
                      [-1.6262468, 2.6357030, 1.6641811],
                      [-3.2984810, 0.4301871, 1.1204208],
                      [-3.1879469, 1.4573895, 0.1996030],
                      [-2.3360261, 2.5813627, 0.4760912],
                      [-0.5005210, -2.9797771, 1.7940308],
                      [-1.7944338, -2.7729087, 1.2047891],
                      [-0.0514245, -2.1328841, 2.7938830],
                      [-2.5891471, -1.7225828, 1.6329715],
                      [-3.3160705, -0.9350636, 0.6765268],
                      [-1.6951919, -3.0692581, -0.1976564],
                      [-2.3954901, -2.3096853, -1.1189862],
                      [-3.2214182, -1.2231835, -0.6739581],
                      [2.1758234, -2.0946263, 1.7922529],
                      [1.7118619, -2.9749681, 0.7557198],
                      [1.3130656, -1.6829416, 2.7943892],
                      [0.3959024, -3.4051395, 0.7557638],
                      [-0.3408219, -3.4591883, -0.4745610],
                      [2.3360057, -2.5814499, -0.4761050],
                      [1.6263757, -2.6357349, -1.6642309],
                      [0.2611352, -3.0821271, -1.6622618],
                      [-2.2100844, -0.5868636, -2.6670300],
                      [-1.7726970, -1.9178969, -2.3530466],
                      [-0.4670723, -2.2950509, -2.6175105],
                      [-1.3283500, 0.3157683, -3.2362375],
                      [-2.1759882, 2.0945383, -1.7923294],
                      [-3.0909663, 1.1583472, -1.2015749],
                      [-3.1076090, -0.1578453, -1.6301627],
                      [-1.3131365, 1.6828292, -2.7943639],
                      [0.5003224, 2.9799637, -1.7940203],
                      [-0.3961148, 3.4052817, -0.7557272],
                      [-1.7120629, 2.9749122, -0.7557988],
                      [0.0512824, 2.1329478, -2.7937450],
                      [2.1258630, 0.8460809, -2.6700534],
                      [2.5891853, 1.7227742, -1.6329562],
                      [1.7943010, 2.7730684, -1.2048262],
                      [0.8781323, 1.0463514, -3.2365313],
                      [0.4482452, -1.3591061, -3.2080510],
                      [1.7416948, -1.5679557, -2.6197714],
                      [2.5621724, -0.4853529, -2.3532026],
                      [0.0257904, -0.0763567, -3.5084446]]},
}