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import errno
import os
import re
import shlex
import shutil
import subprocess
import sys
import textwrap
from distutils import log, ccompiler, sysconfig
from distutils.core import Extension
from distutils.ccompiler import get_default_compiler
from setuptools.command.build_ext import build_ext as SetuptoolsBuildExt
from ..utils import get_numpy_include_path, invalidate_caches, classproperty
from ..version_helpers import get_pkg_version_module
def should_build_with_cython(package, release=None):
"""Returns the previously used Cython version (or 'unknown' if not
previously built) if Cython should be used to build extension modules from
pyx files. If the ``release`` parameter is not specified an attempt is
made to determine the release flag from `astropy.version`.
"""
try:
version_module = __import__(package + '.cython_version',
fromlist=['release', 'cython_version'])
except ImportError:
version_module = None
if release is None and version_module is not None:
try:
release = version_module.release
except AttributeError:
pass
try:
cython_version = version_module.cython_version
except AttributeError:
cython_version = 'unknown'
# Only build with Cython if, of course, Cython is installed, we're in a
# development version (i.e. not release) or the Cython-generated source
# files haven't been created yet (cython_version == 'unknown'). The latter
# case can happen even when release is True if checking out a release tag
# from the repository
have_cython = False
try:
import Cython # noqa
have_cython = True
except ImportError:
pass
if have_cython and (not release or cython_version == 'unknown'):
return cython_version
else:
return False
_compiler_versions = {}
def get_compiler_version(compiler):
if compiler in _compiler_versions:
return _compiler_versions[compiler]
# Different flags to try to get the compiler version
# TODO: It might be worth making this configurable to support
# arbitrary odd compilers; though all bets may be off in such
# cases anyway
flags = ['--version', '--Version', '-version', '-Version',
'-v', '-V']
def try_get_version(flag):
process = subprocess.Popen(
shlex.split(compiler, posix=('win' not in sys.platform)) + [flag],
stdout=subprocess.PIPE, stderr=subprocess.PIPE)
stdout, stderr = process.communicate()
if process.returncode != 0:
return 'unknown'
output = stdout.strip().decode('latin-1') # Safest bet
if not output:
# Some compilers return their version info on stderr
output = stderr.strip().decode('latin-1')
if not output:
output = 'unknown'
return output
for flag in flags:
version = try_get_version(flag)
if version != 'unknown':
break
# Cache results to speed up future calls
_compiler_versions[compiler] = version
return version
# TODO: I think this can be reworked without having to create the class
# programmatically.
def generate_build_ext_command(packagename, release):
"""
Creates a custom 'build_ext' command that allows for manipulating some of
the C extension options at build time. We use a function to build the
class since the base class for build_ext may be different depending on
certain build-time parameters (for example, we may use Cython's build_ext
instead of the default version in distutils).
Uses the default distutils.command.build_ext by default.
"""
class build_ext(SetuptoolsBuildExt, object):
package_name = packagename
is_release = release
_user_options = SetuptoolsBuildExt.user_options[:]
_boolean_options = SetuptoolsBuildExt.boolean_options[:]
_help_options = SetuptoolsBuildExt.help_options[:]
force_rebuild = False
_broken_compiler_mapping = [
('i686-apple-darwin[0-9]*-llvm-gcc-4.2', 'clang')
]
# Warning: Spaghetti code ahead.
# During setup.py, the setup_helpers module needs the ability to add
# items to a command's user_options list. At this stage we don't know
# whether or not we can build with Cython, and so don't know for sure
# what base class will be used for build_ext; nevertheless we want to
# be able to provide a list to add options into.
#
# Later, once setup() has been called we should have all build
# dependencies included via setup_requires available. distutils needs
# to be able to access the user_options as a *class* attribute before
# the class has been initialized, but we do need to be able to
# enumerate the options for the correct base class at that point
@classproperty
def user_options(cls):
from distutils import core
if core._setup_distribution is None:
# We haven't gotten into setup() yet, and the Distribution has
# not yet been initialized
return cls._user_options
return cls._final_class.user_options
@classproperty
def boolean_options(cls):
# Similar to user_options above
from distutils import core
if core._setup_distribution is None:
# We haven't gotten into setup() yet, and the Distribution has
# not yet been initialized
return cls._boolean_options
return cls._final_class.boolean_options
@classproperty
def help_options(cls):
# Similar to user_options above
from distutils import core
if core._setup_distribution is None:
# We haven't gotten into setup() yet, and the Distribution has
# not yet been initialized
return cls._help_options
return cls._final_class.help_options
@classproperty(lazy=True)
def _final_class(cls):
"""
Late determination of what the build_ext base class should be,
depending on whether or not Cython is available.
"""
uses_cython = should_build_with_cython(cls.package_name,
cls.is_release)
if uses_cython:
# We need to decide late on whether or not to use Cython's
# build_ext (since Cython may not be available earlier in the
# setup.py if it was brought in via setup_requires)
try:
from Cython.Distutils.old_build_ext import old_build_ext as base_cls
except ImportError:
from Cython.Distutils import build_ext as base_cls
else:
base_cls = SetuptoolsBuildExt
# Create and return an instance of a new class based on this class
# using one of the above possible base classes
def merge_options(attr):
base = getattr(base_cls, attr)
ours = getattr(cls, '_' + attr)
all_base = set(opt[0] for opt in base)
return base + [opt for opt in ours if opt[0] not in all_base]
boolean_options = (base_cls.boolean_options +
[opt for opt in cls._boolean_options
if opt not in base_cls.boolean_options])
members = dict(cls.__dict__)
members.update({
'user_options': merge_options('user_options'),
'help_options': merge_options('help_options'),
'boolean_options': boolean_options,
'uses_cython': uses_cython,
})
# Update the base class for the original build_ext command
build_ext.__bases__ = (base_cls, object)
# Create a new class for the existing class, but now with the
# appropriate base class depending on whether or not to use Cython.
# Ensure that object is one of the bases to make a new-style class.
return type(cls.__name__, (build_ext,), members)
def __new__(cls, *args, **kwargs):
# By the time the command is actually instantialized, the
# Distribution instance for the build has been instantiated, which
# means setup_requires has been processed--now we can determine
# what base class we can use for the actual build, and return an
# instance of a build_ext command that uses that base class (right
# now the options being Cython.Distutils.build_ext, or the stock
# setuptools build_ext)
new_cls = super(build_ext, cls._final_class).__new__(
cls._final_class)
# Since the new cls is not a subclass of the original cls, we must
# manually call its __init__
new_cls.__init__(*args, **kwargs)
return new_cls
def finalize_options(self):
# Add a copy of the _compiler.so module as well, but only if there
# are in fact C modules to compile (otherwise there's no reason to
# include a record of the compiler used)
# Note, self.extensions may not be set yet, but
# self.distribution.ext_modules is where any extension modules
# passed to setup() can be found
self._adjust_compiler()
extensions = self.distribution.ext_modules
if extensions:
src_path = os.path.relpath(
os.path.join(os.path.dirname(__file__), 'src'))
shutil.copy(os.path.join(src_path, 'compiler.c'),
os.path.join(self.package_name, '_compiler.c'))
ext = Extension(self.package_name + '._compiler',
[os.path.join(self.package_name, '_compiler.c')])
extensions.insert(0, ext)
super(build_ext, self).finalize_options()
# Generate
if self.uses_cython:
try:
from Cython import __version__ as cython_version
except ImportError:
# This shouldn't happen if we made it this far
cython_version = None
if (cython_version is not None and
cython_version != self.uses_cython):
self.force_rebuild = True
# Update the used cython version
self.uses_cython = cython_version
# Regardless of the value of the '--force' option, force a rebuild
# if the debug flag changed from the last build
if self.force_rebuild:
self.force = True
def run(self):
# For extensions that require 'numpy' in their include dirs,
# replace 'numpy' with the actual paths
np_include = get_numpy_include_path()
for extension in self.extensions:
if 'numpy' in extension.include_dirs:
idx = extension.include_dirs.index('numpy')
extension.include_dirs.insert(idx, np_include)
extension.include_dirs.remove('numpy')
self._check_cython_sources(extension)
super(build_ext, self).run()
# Update cython_version.py if building with Cython
try:
cython_version = get_pkg_version_module(
packagename, fromlist=['cython_version'])[0]
except (AttributeError, ImportError):
cython_version = 'unknown'
if self.uses_cython and self.uses_cython != cython_version:
package_dir = os.path.relpath(packagename)
cython_py = os.path.join(package_dir, 'cython_version.py')
with open(cython_py, 'w') as f:
f.write('# Generated file; do not modify\n')
f.write('cython_version = {0!r}\n'.format(self.uses_cython))
if os.path.isdir(self.build_lib):
# The build/lib directory may not exist if the build_py
# command was not previously run, which may sometimes be
# the case
self.copy_file(cython_py,
os.path.join(self.build_lib, cython_py),
preserve_mode=False)
invalidate_caches()
def _adjust_compiler(self):
"""
This function detects broken compilers and switches to another. If
the environment variable CC is explicitly set, or a compiler is
specified on the commandline, no override is performed -- the
purpose here is to only override a default compiler.
The specific compilers with problems are:
* The default compiler in XCode-4.2, llvm-gcc-4.2,
segfaults when compiling wcslib.
The set of broken compilers can be updated by changing the
compiler_mapping variable. It is a list of 2-tuples where the
first in the pair is a regular expression matching the version of
the broken compiler, and the second is the compiler to change to.
"""
if 'CC' in os.environ:
# Check that CC is not set to llvm-gcc-4.2
c_compiler = os.environ['CC']
try:
version = get_compiler_version(c_compiler)
except OSError:
msg = textwrap.dedent(
"""
The C compiler set by the CC environment variable:
{compiler:s}
cannot be found or executed.
""".format(compiler=c_compiler))
log.warn(msg)
sys.exit(1)
for broken, fixed in self._broken_compiler_mapping:
if re.match(broken, version):
msg = textwrap.dedent(
"""Compiler specified by CC environment variable
({compiler:s}:{version:s}) will fail to compile
{pkg:s}.
Please set CC={fixed:s} and try again.
You can do this, for example, by running:
CC={fixed:s} python setup.py <command>
where <command> is the command you ran.
""".format(compiler=c_compiler, version=version,
pkg=self.package_name, fixed=fixed))
log.warn(msg)
sys.exit(1)
# If C compiler is set via CC, and isn't broken, we are good to go. We
# should definitely not try accessing the compiler specified by
# ``sysconfig.get_config_var('CC')`` lower down, because this may fail
# if the compiler used to compile Python is missing (and maybe this is
# why the user is setting CC). For example, the official Python 2.7.3
# MacOS X binary was compiled with gcc-4.2, which is no longer available
# in XCode 4.
return
if self.compiler is not None:
# At this point, self.compiler will be set only if a compiler
# was specified in the command-line or via setup.cfg, in which
# case we don't do anything
return
compiler_type = ccompiler.get_default_compiler()
if compiler_type == 'unix':
# We have to get the compiler this way, as this is the one that is
# used if os.environ['CC'] is not set. It is actually read in from
# the Python Makefile. Note that this is not necessarily the same
# compiler as returned by ccompiler.new_compiler()
c_compiler = sysconfig.get_config_var('CC')
try:
version = get_compiler_version(c_compiler)
except OSError:
msg = textwrap.dedent(
"""
The C compiler used to compile Python {compiler:s}, and
which is normally used to compile C extensions, is not
available. You can explicitly specify which compiler to
use by setting the CC environment variable, for example:
CC=gcc python setup.py <command>
or if you are using MacOS X, you can try:
CC=clang python setup.py <command>
""".format(compiler=c_compiler))
log.warn(msg)
sys.exit(1)
for broken, fixed in self._broken_compiler_mapping:
if re.match(broken, version):
os.environ['CC'] = fixed
break
def _check_cython_sources(self, extension):
"""
Where relevant, make sure that the .c files associated with .pyx
modules are present (if building without Cython installed).
"""
# Determine the compiler we'll be using
if self.compiler is None:
compiler = get_default_compiler()
else:
compiler = self.compiler
# Replace .pyx with C-equivalents, unless c files are missing
for jdx, src in enumerate(extension.sources):
base, ext = os.path.splitext(src)
pyxfn = base + '.pyx'
cfn = base + '.c'
cppfn = base + '.cpp'
if not os.path.isfile(pyxfn):
continue
if self.uses_cython:
extension.sources[jdx] = pyxfn
else:
if os.path.isfile(cfn):
extension.sources[jdx] = cfn
elif os.path.isfile(cppfn):
extension.sources[jdx] = cppfn
else:
msg = (
'Could not find C/C++ file {0}.(c/cpp) for Cython '
'file {1} when building extension {2}. Cython '
'must be installed to build from a git '
'checkout.'.format(base, pyxfn, extension.name))
raise IOError(errno.ENOENT, msg, cfn)
# Current versions of Cython use deprecated Numpy API features
# the use of which produces a few warnings when compiling.
# These additional flags should squelch those warnings.
# TODO: Feel free to remove this if/when a Cython update
# removes use of the deprecated Numpy API
if compiler == 'unix':
extension.extra_compile_args.extend([
'-Wp,-w', '-Wno-unused-function'])
return build_ext
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