File: test_api_ape5.py

package info (click to toggle)
python-astropy 1.3-8~bpo8%2B2
  • links: PTS, VCS
  • area: main
  • in suites: jessie-backports
  • size: 44,292 kB
  • sloc: ansic: 160,360; python: 137,322; sh: 11,493; lex: 7,638; yacc: 4,956; xml: 1,796; makefile: 474; cpp: 364
file content (450 lines) | stat: -rw-r--r-- 21,089 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
# -*- coding: utf-8 -*-
# Licensed under a 3-clause BSD style license - see LICENSE.rst
from __future__ import (absolute_import, division, print_function,
                        unicode_literals)

"""
This is the APE5 coordinates API document re-written to work as a series of test
functions.

Note that new tests for coordinates functionality should generally *not* be
added to this file - instead, add them to other appropriate test modules  in
this package, like ``test_sky_coord.py``, ``test_frames.py``, or
``test_representation.py``.  This file is instead meant mainly to keep track of
deviations from the original APE5 plan.
"""

import numpy as np
from numpy.random import randn
from numpy import testing as npt
from ...tests.helper import (pytest, quantity_allclose as allclose,
                             assert_quantity_allclose as assert_allclose)
raises = pytest.raises

from ... import units as u
from ... import time
from ... import coordinates as coords
from ..errors import *

try:
    import scipy  # pylint: disable=W0611
except ImportError:
    HAS_SCIPY = False
else:
    HAS_SCIPY = True


def test_representations_api():
    from ..representation import SphericalRepresentation, \
        UnitSphericalRepresentation, PhysicsSphericalRepresentation, \
        CartesianRepresentation
    from ... coordinates import Angle, Longitude, Latitude, Distance

    #<-----------------Classes for representation of coordinate data--------------->
    # These classes inherit from a common base class and internally contain Quantity
    # objects, which are arrays (although they may act as scalars, like numpy's
    # length-0  "arrays")

    # They can be initialized with a variety of ways that make intuitive sense.
    # Distance is optional.
    UnitSphericalRepresentation(lon=8*u.hour, lat=5*u.deg)
    UnitSphericalRepresentation(lon=8*u.hourangle, lat=5*u.deg)
    SphericalRepresentation(lon=8*u.hourangle, lat=5*u.deg, distance=10*u.kpc)

    # In the initial implementation, the lat/lon/distance arguments to the
    # initializer must be in order. A *possible* future change will be to allow
    # smarter guessing of the order.  E.g. `Latitude` and `Longitude` objects can be
    # given in any order.
    UnitSphericalRepresentation(Longitude(8, u.hour), Latitude(5, u.deg))
    SphericalRepresentation(Longitude(8, u.hour), Latitude(5, u.deg), Distance(10, u.kpc))

    # Arrays of any of the inputs are fine
    UnitSphericalRepresentation(lon=[8, 9]*u.hourangle, lat=[5, 6]*u.deg)

    # Default is to copy arrays, but optionally, it can be a reference
    UnitSphericalRepresentation(lon=[8, 9]*u.hourangle, lat=[5, 6]*u.deg, copy=False)

    # strings are parsed by `Latitude` and `Longitude` constructors, so no need to
    # implement parsing in the Representation classes
    UnitSphericalRepresentation(lon=Angle('2h6m3.3s'), lat=Angle('0.1rad'))

    # Or, you can give `Quantity`s with keywords, and they will be internally
    # converted to Angle/Distance
    c1 = SphericalRepresentation(lon=8*u.hourangle, lat=5*u.deg, distance=10*u.kpc)

    # Can also give another representation object with the `reprobj` keyword.
    c2 = SphericalRepresentation.from_representation(c1)

    #  distance, lat, and lon typically will just match in shape
    SphericalRepresentation(lon=[8, 9]*u.hourangle, lat=[5, 6]*u.deg, distance=[10, 11]*u.kpc)
    # if the inputs are not the same, if possible they will be broadcast following
    # numpy's standard broadcasting rules.
    c2 = SphericalRepresentation(lon=[8, 9]*u.hourangle, lat=[5, 6]*u.deg, distance=10*u.kpc)
    assert len(c2.distance) == 2
    #when they can't be broadcast, it is a ValueError (same as Numpy)
    with raises(ValueError):
        c2 = UnitSphericalRepresentation(lon=[8, 9, 10]*u.hourangle, lat=[5, 6]*u.deg)

    # It's also possible to pass in scalar quantity lists with mixed units. These
    # are converted to array quantities following the same rule as `Quantity`: all
    # elements are converted to match the first element's units.
    c2 = UnitSphericalRepresentation(lon=Angle([8*u.hourangle, 135*u.deg]),
                                     lat=Angle([5*u.deg, (6*np.pi/180)*u.rad]))
    assert c2.lat.unit == u.deg and c2.lon.unit == u.hourangle
    npt.assert_almost_equal(c2.lon[1].value, 9)

    # The Quantity initializer itself can also be used to force the unit even if the
    # first element doesn't have the right unit
    lon = u.Quantity([120*u.deg, 135*u.deg], u.hourangle)
    lat = u.Quantity([(5*np.pi/180)*u.rad, 0.4*u.hourangle], u.deg)
    c2 = UnitSphericalRepresentation(lon, lat)

    # regardless of how input, the `lat` and `lon` come out as angle/distance
    assert isinstance(c1.lat, Angle)
    assert isinstance(c1.lat, Latitude)  # `Latitude` is an `Angle` subclass
    assert isinstance(c1.distance, Distance)

    # but they are read-only, as representations are immutable once created
    with raises(AttributeError):
        c1.lat = Latitude(5, u.deg)
    # Note that it is still possible to modify the array in-place, but this is not
    # sanctioned by the API, as this would prevent things like caching.
    c2.lat[:] = [0] * u.deg  # possible, but NOT SUPPORTED

    # To address the fact that there are various other conventions for how spherical
    # coordinates are defined, other conventions can be included as new classes.
    # Later there may be other conventions that we implement - for now just the
    # physics convention, as it is one of the most common cases.
    c3 = PhysicsSphericalRepresentation(phi=120*u.deg, theta=85*u.deg, r=3*u.kpc)

    # first dimension must be length-3 if a lone `Quantity` is passed in.
    c1 = CartesianRepresentation(randn(3, 100) * u.kpc)
    assert c1.xyz.shape[0] == 3
    assert c1.xyz.unit == u.kpc
    assert c1.x.shape[0] == 100
    assert c1.y.shape[0] == 100
    assert c1.z.shape[0] == 100
    # can also give each as separate keywords
    CartesianRepresentation(x=randn(100)*u.kpc, y=randn(100)*u.kpc, z=randn(100)*u.kpc)
    # if the units don't match but are all distances, they will automatically be
    # converted to match `x`
    xarr, yarr, zarr = randn(3, 100)
    c1 = CartesianRepresentation(x=xarr*u.kpc, y=yarr*u.kpc, z=zarr*u.kpc)
    c2 = CartesianRepresentation(x=xarr*u.kpc, y=yarr*u.kpc, z=zarr*u.pc)
    assert c1.xyz.unit ==  c2.xyz.unit == u.kpc
    assert_allclose((c1.z / 1000) - c2.z, 0*u.kpc, atol=1e-10*u.kpc)

    # representations convert into other representations via  `represent_as`
    srep = SphericalRepresentation(lon=90*u.deg, lat=0*u.deg, distance=1*u.pc)
    crep = srep.represent_as(CartesianRepresentation)
    assert_allclose(crep.x, 0*u.pc, atol=1e-10*u.pc)
    assert_allclose(crep.y, 1*u.pc, atol=1e-10*u.pc)
    assert_allclose(crep.z, 0*u.pc, atol=1e-10*u.pc)
    # The functions that actually do the conversion are defined via methods on the
    # representation classes. This may later be expanded into a full registerable
    # transform graph like the coordinate frames, but initially it will be a simpler
    # method system


def test_frame_api():
    from ..representation import SphericalRepresentation, \
                                 UnitSphericalRepresentation
    from ..builtin_frames import ICRS, FK5
    #<---------------------Reference Frame/"Low-level" classes--------------------->
    # The low-level classes have a dual role: they act as specifiers of coordinate
    # frames and they *may* also contain data as one of the representation objects,
    # in which case they are the actual coordinate objects themselves.

    # They can always accept a representation as a first argument
    icrs = ICRS(UnitSphericalRepresentation(lon=8*u.hour, lat=5*u.deg))

    # which is stored as the `data` attribute
    assert icrs.data.lat == 5*u.deg
    assert icrs.data.lon == 8*u.hourangle

    # Frames that require additional information like equinoxs or obstimes get them
    # as keyword parameters to the frame constructor.  Where sensible, defaults are
    # used. E.g., FK5 is almost always J2000 equinox
    fk5 = FK5(UnitSphericalRepresentation(lon=8*u.hour, lat=5*u.deg))
    J2000 = time.Time('J2000', scale='utc')
    fk5_2000 = FK5(UnitSphericalRepresentation(lon=8*u.hour, lat=5*u.deg), equinox=J2000)
    assert fk5.equinox == fk5_2000.equinox

    # the information required to specify the frame is immutable
    J2001 = time.Time('J2001', scale='utc')
    with raises(AttributeError):
        fk5.equinox = J2001

    # Similar for the representation data.
    with raises(AttributeError):
        fk5.data = UnitSphericalRepresentation(lon=8*u.hour, lat=5*u.deg)

    # There is also a class-level attribute that lists the attributes needed to
    # identify the frame.  These include attributes like `equinox` shown above.
    assert all(nm in ('equinox', 'obstime') for nm in fk5.get_frame_attr_names())

    # the result of `get_frame_attr_names` is called for particularly in  the
    # high-level class (discussed below) to allow round-tripping between various
    # frames.  It is also part of the public API for other similar developer /
    # advanced users' use.

    # The actual position information is accessed via the representation objects
    assert_allclose(icrs.represent_as(SphericalRepresentation).lat, 5*u.deg)
    # shorthand for the above
    assert_allclose(icrs.spherical.lat, 5*u.deg)
    assert icrs.cartesian.z.value > 0

    # Many frames have a "default" representation, the one in which they are
    # conventionally described, often with a special name for some of the
    # coordinates. E.g., most equatorial coordinate systems are spherical with RA and
    # Dec. This works simply as a shorthand for the longer form above

    assert_allclose(icrs.dec, 5*u.deg)
    assert_allclose(fk5.ra, 8*u.hourangle)

    assert icrs.representation == SphericalRepresentation

    # low-level classes can also be initialized with names valid for that representation
    # and frame:
    icrs_2 = ICRS(ra=8*u.hour, dec=5*u.deg, distance=1*u.kpc)
    assert_allclose(icrs.ra, icrs_2.ra)

    # and these are taken as the default if keywords are not given:
    #icrs_nokwarg = ICRS(8*u.hour, 5*u.deg, distance=1*u.kpc)
    #assert icrs_nokwarg.ra == icrs_2.ra and icrs_nokwarg.dec == icrs_2.dec

    # they also are capable of computing on-sky or 3d separations from each other,
    # which will be a direct port of the existing methods:
    coo1 = ICRS(ra=0*u.hour, dec=0*u.deg)
    coo2 = ICRS(ra=0*u.hour, dec=1*u.deg)
    # `separation` is the on-sky separation
    assert coo1.separation(coo2).degree == 1.0

    # while `separation_3d` includes the 3D distance information
    coo3 = ICRS(ra=0*u.hour, dec=0*u.deg, distance=1*u.kpc)
    coo4 = ICRS(ra=0*u.hour, dec=0*u.deg, distance=2*u.kpc)
    assert coo3.separation_3d(coo4).kpc == 1.0

    # The next example fails because `coo1` and `coo2` don't have distances
    with raises(ValueError):
        assert coo1.separation_3d(coo2).kpc == 1.0

    # repr/str also shows info, with frame and data
    #assert repr(fk5) == ''


def test_transform_api():
    from ..representation import UnitSphericalRepresentation
    from ..builtin_frames import ICRS, FK5
    from ..baseframe import frame_transform_graph, BaseCoordinateFrame
    from ..transformations import DynamicMatrixTransform
    #<-------------------------Transformations------------------------------------->
    # Transformation functionality is the key to the whole scheme: they transform
    # low-level classes from one frame to another.

    #(used below but defined above in the API)
    fk5 = FK5(ra=8*u.hour, dec=5*u.deg)

    # If no data (or `None`) is given, the class acts as a specifier of a frame, but
    # without any stored data.
    J2001 = time.Time('J2001', scale='utc')
    fk5_J2001_frame = FK5(equinox=J2001)

    # if they do not have data, the string instead is the frame specification
    assert repr(fk5_J2001_frame) == "<FK5 Frame (equinox=J2001.000)>"

    #  Note that, although a frame object is immutable and can't have data added, it
    #  can be used to create a new object that does have data by giving the
    # `realize_frame` method a representation:
    srep = UnitSphericalRepresentation(lon=8*u.hour, lat=5*u.deg)
    fk5_j2001_with_data = fk5_J2001_frame.realize_frame(srep)
    assert fk5_j2001_with_data.data is not None
    # Now `fk5_j2001_with_data` is in the same frame as `fk5_J2001_frame`, but it
    # is an actual low-level coordinate, rather than a frame without data.

    # These frames are primarily useful for specifying what a coordinate should be
    # transformed *into*, as they are used by the `transform_to` method
    # E.g., this snippet precesses the point to the new equinox
    newfk5 = fk5.transform_to(fk5_J2001_frame)
    assert newfk5.equinox == J2001

    # classes can also be given to `transform_to`, which then uses the defaults for
    # the frame information:
    samefk5 = fk5.transform_to(FK5)
    # `fk5` was initialized using default `obstime` and `equinox`, so:
    assert_allclose(samefk5.ra, fk5.ra, atol=1e-10*u.deg)
    assert_allclose(samefk5.dec, fk5.dec, atol=1e-10*u.deg)

    # transforming to a new frame necessarily loses framespec information if that
    # information is not applicable to the new frame.  This means transforms are not
    # always round-trippable:
    fk5_2 = FK5(ra=8*u.hour, dec=5*u.deg, equinox=J2001)
    ic_trans = fk5_2.transform_to(ICRS)

    # `ic_trans` does not have an `equinox`, so now when we transform back to FK5,
    # it's a *different* RA and Dec
    fk5_trans = ic_trans.transform_to(FK5)
    assert not allclose(fk5_2.ra, fk5_trans.ra, rtol=0, atol=1e-10*u.deg)

    # But if you explicitly give the right equinox, all is fine
    fk5_trans_2 = fk5_2.transform_to(FK5(equinox=J2001))
    assert_allclose(fk5_2.ra, fk5_trans_2.ra, rtol=0, atol=1e-10*u.deg)

    # Trying to transforming a frame with no data is of course an error:
    with raises(ValueError):
        FK5(equinox=J2001).transform_to(ICRS)


    # To actually define a new transformation, the same scheme as in the
    # 0.2/0.3 coordinates framework can be re-used - a graph of transform functions
    # connecting various coordinate classes together.  The main changes are:
    # 1) The transform functions now get the frame object they are transforming the
    #    current data into.
    # 2) Frames with additional information need to have a way to transform between
    #    objects of the same class, but with different framespecinfo values

    # An example transform function:
    class SomeNewSystem(BaseCoordinateFrame):
        pass
    @frame_transform_graph.transform(DynamicMatrixTransform, SomeNewSystem, FK5)
    def new_to_fk5(newobj, fk5frame):
        ot = newobj.obstime
        eq = fk5frame.equinox
        # ... build a *cartesian* transform matrix using `eq` that transforms from
        # the `newobj` frame as observed at `ot` to FK5 an equinox `eq`
        matrix = np.eye(3)
        return matrix

    # Other options for transform functions include one that simply returns the new
    # coordinate object, and one that returns a cartesian matrix but does *not*
    # require `newobj` or `fk5frame` - this allows optimization of the transform.


def test_highlevel_api():
    J2001 = time.Time('J2001', scale='utc')

    #<---------------------------"High-level" class-------------------------------->
    # The "high-level" class is intended to wrap the lower-level classes in such a
    # way that they can be round-tripped, as well as providing a variety of
    # convenience functionality.  This document is not intended to show *all* of the
    # possible high-level functionality, rather how the high-level classes are
    # initialized and interact with the low-level classes

    # this creates an object that contains an `ICRS` low-level class, initialized
    # identically to the first ICRS example further up.

    sc = coords.SkyCoord(coords.SphericalRepresentation(lon=8 * u.hour,
                         lat=5 * u.deg, distance=1 * u.kpc), frame='icrs')

    # Other representations and `system` keywords delegate to the appropriate
    # low-level class. The already-existing registry for user-defined coordinates
    # will be used by `SkyCoordinate` to figure out what various the `system`
    # keyword actually means.

    sc = coords.SkyCoord(ra=8 * u.hour, dec=5 * u.deg, frame='icrs')
    sc = coords.SkyCoord(l=120 * u.deg, b=5 * u.deg, frame='galactic')

    # High-level classes can also be initialized directly from low-level objects
    sc = coords.SkyCoord(coords.ICRS(ra=8 * u.hour, dec=5 * u.deg))

    # The next example raises an error because the high-level class must always
    # have position data.
    with pytest.raises(ValueError):
        sc = coords.SkyCoord(coords.FK5(equinox=J2001))  # raises ValueError

    # similarly, the low-level object can always be accessed

    #this is how it's supposed to look, but sometimes the numbers get rounded in
    #funny ways
    #assert repr(sc.frame) == '<ICRS Coordinate: ra=120.0 deg, dec=5.0 deg>'
    rscf = repr(sc.frame)
    assert rscf.startswith('<ICRS Coordinate: (ra, dec) in deg')

    # and  the string representation will be inherited from the low-level class.

    # same deal, should loook like this, but different archituectures/ python
    # versions may round the numbers differently
    #assert repr(sc) == '<SkyCoord (ICRS): ra=120.0 deg, dec=5.0 deg>'
    rsc = repr(sc)
    assert rsc.startswith('<SkyCoord (ICRS): (ra, dec) in deg')

    # Supports a variety of possible complex string formats
    sc = coords.SkyCoord('8h00m00s +5d00m00.0s', frame='icrs')

    # In the next example, the unit is only needed b/c units are ambiguous.  In
    # general, we *never* accept ambiguity
    sc = coords.SkyCoord('8:00:00 +5:00:00.0', unit=(u.hour, u.deg), frame='icrs')

    # The next one would yield length-2 array coordinates, because of the comma

    sc = coords.SkyCoord(['8h 5d', '2°2′3″ 0.3rad'], frame='icrs')

    # It should also interpret common designation styles as a coordinate
    # NOT YET
    # sc = coords.SkyCoord('SDSS J123456.89-012345.6', frame='icrs')

    # but it should also be possible to provide formats for outputting to strings,
    # similar to `Time`.  This can be added right away or at a later date.

    # transformation is done the same as for low-level classes, which it delegates to

    sc_fk5_j2001 = sc.transform_to(coords.FK5(equinox=J2001))
    assert sc_fk5_j2001.equinox == J2001

    # The key difference is that the high-level class remembers frame information
    # necessary for round-tripping, unlike the low-level classes:
    sc1 = coords.SkyCoord(ra=8 * u.hour, dec=5 * u.deg, equinox=J2001, frame='fk5')
    sc2 = sc1.transform_to('icrs')

    # The next assertion succeeds, but it doesn't mean anything for ICRS, as ICRS
    # isn't defined in terms of an equinox
    assert sc2.equinox == J2001

    # But it *is* necessary once we transform to FK5
    sc3 = sc2.transform_to('fk5')
    assert sc3.equinox == J2001
    assert_allclose(sc1.ra, sc3.ra)

    # `SkyCoord` will also include the attribute-style access that is in the
    # v0.2/0.3 coordinate objects.  This will *not* be in the low-level classes
    sc = coords.SkyCoord(ra=8 * u.hour, dec=5 * u.deg, frame='icrs')
    scgal = sc.galactic
    assert str(scgal).startswith('<SkyCoord (Galactic): (l, b)')

    # the existing `from_name` and `match_to_catalog_*` methods will be moved to the
    # high-level class as convenience functionality.

    #in remote-data test below!
    #m31icrs = coords.SkyCoord.from_name('M31', frame='icrs')
    #assert str(m31icrs) == '<SkyCoord (ICRS) RA=10.68471 deg, Dec=41.26875 deg>'

    if HAS_SCIPY:
        cat1 = coords.SkyCoord(ra=[1, 2]*u.hr, dec=[3, 4.01]*u.deg, distance=[5, 6]*u.kpc, frame='icrs')
        cat2 = coords.SkyCoord(ra=[1, 2, 2.01]*u.hr, dec=[3, 4, 5]*u.deg, distance=[5, 200, 6]*u.kpc, frame='icrs')
        idx1, sep2d1, dist3d1 = cat1.match_to_catalog_sky(cat2)
        idx2, sep2d2, dist3d2 = cat1.match_to_catalog_3d(cat2)

        assert np.any(idx1 != idx2)

    # additional convenience functionality for the future should be added as methods
    # on `SkyCoord`, *not* the low-level classes.


@pytest.mark.remote_data
def test_highlevel_api_remote():
    m31icrs = coords.SkyCoord.from_name('M31', frame='icrs')

    m31str = str(m31icrs)
    assert m31str.startswith('<SkyCoord (ICRS): (ra, dec) in deg\n    (')
    assert m31str.endswith(')>')
    assert '10.68' in m31str
    assert '41.26' in m31str
    # The above is essentially a replacement of the below, but tweaked so that
    # small/moderate changes in what `from_name` returns don't cause the tests
    # to fail
    #assert str(m31icrs) == '<SkyCoord (ICRS): (ra, dec) in deg\n    (10.6847083, 41.26875)>'

    m31fk4 = coords.SkyCoord.from_name('M31', frame='fk4')

    assert m31icrs.frame != m31fk4.frame
    assert np.abs(m31icrs.ra - m31fk4.ra) > .5*u.deg