1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658
|
# -*- coding: utf-8 -*-
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""Function Units and Quantities."""
from __future__ import (absolute_import, unicode_literals,
division, print_function)
from abc import ABCMeta, abstractmethod, abstractproperty
import numpy as np
from ...extern import six
from .. import (Unit, UnitBase, UnitsError, UnitTypeError,
dimensionless_unscaled, Quantity)
__all__ = ['FunctionUnitBase', 'FunctionQuantity']
SUPPORTED_UFUNCS = set(getattr(np.core.umath, ufunc) for ufunc in (
'isfinite', 'isinf', 'isnan', 'sign', 'signbit',
'rint', 'floor', 'ceil', 'trunc', 'power',
'_ones_like', 'ones_like') if hasattr(np.core.umath, ufunc))
# TODO: the following could work if helper changed relative to Quantity:
# - spacing should return dimensionless, not same unit
# - negative should negate unit too,
# - add, subtract, comparisons can work if units added/subtracted
SUPPORTED_FUNCTIONS = set(getattr(np, function) for function in
('clip', 'trace', 'mean', 'min', 'max', 'round'))
# subclassing UnitBase or CompositeUnit was found to be problematic, requiring
# a large number of overrides. Hence, define new class.
@six.add_metaclass(ABCMeta)
class FunctionUnitBase(object):
"""Abstract base class for function units.
Function units are functions containing a physical unit, such as dB(mW).
Most of the arithmetic operations on function units are defined in this
base class.
While instantiation is defined, this class should not be used directly.
Rather, subclasses should be used that override the abstract properties
`_default_function_unit` and `_quantity_class`, and the abstract methods
`from_physical`, and `to_physical`.
Parameters
----------
physical_unit : `~astropy.units.Unit` or `string`
Unit that is encapsulated within the function unit.
If not given, dimensionless.
function_unit : `~astropy.units.Unit` or `string`
By default, the same as the function unit set by the subclass.
"""
# ↓↓↓ the following four need to be set by subclasses
# Make this a property so we can ensure subclasses define it.
@abstractproperty
def _default_function_unit(self):
"""Default function unit corresponding to the function.
This property should be overridden by subclasses, with, e.g.,
`~astropy.unit.MagUnit` returning `~astropy.unit.mag`.
"""
# This has to be a property because the function quantity will not be
# known at unit definition time, as it gets defined after.
@abstractproperty
def _quantity_class(self):
"""Function quantity class corresponding to this function unit.
This property should be overridden by subclasses, with, e.g.,
`~astropy.unit.MagUnit` returning `~astropy.unit.Magnitude`.
"""
@abstractmethod
def from_physical(self, x):
"""Transformation from value in physical to value in function units.
This method should be overridden by subclasses. It is used to
provide automatic transformations using an equivalency.
"""
@abstractmethod
def to_physical(self, x):
"""Transformation from value in function to value in physical units.
This method should be overridden by subclasses. It is used to
provide automatic transformations using an equivalency.
"""
# ↑↑↑ the above four need to be set by subclasses
# have priority over arrays, regular units, and regular quantities
__array_priority__ = 30000
def __init__(self, physical_unit=None, function_unit=None):
if physical_unit is None:
self._physical_unit = dimensionless_unscaled
else:
self._physical_unit = Unit(physical_unit)
if (not isinstance(self._physical_unit, UnitBase) or
self._physical_unit.is_equivalent(
self._default_function_unit)):
raise ValueError("Unit {0} is not a physical unit."
.format(self._physical_unit))
if function_unit is None:
self._function_unit = self._default_function_unit
else:
# any function unit should be equivalent to subclass default
function_unit = Unit(getattr(function_unit, 'function_unit',
function_unit))
if function_unit.is_equivalent(self._default_function_unit):
self._function_unit = function_unit
else:
raise ValueError("Cannot initialize '{0}' instance with "
"function unit '{1}', as it is not "
"equivalent to default function unit '{2}'."
.format(self.__class__.__name__,
function_unit,
self._default_function_unit))
def _copy(self, physical_unit=None):
"""Copy oneself, possibly with a different physical unit."""
if physical_unit is None:
physical_unit = self.physical_unit
return self.__class__(physical_unit, self.function_unit)
@property
def physical_unit(self):
return self._physical_unit
@property
def function_unit(self):
return self._function_unit
@property
def equivalencies(self):
"""List of equivalencies between function and physical units.
Uses the `from_physical` and `to_physical` methods.
"""
return [(self, self.physical_unit,
self.to_physical, self.from_physical)]
# ↓↓↓ properties/methods required to behave like a unit
def decompose(self, bases=set()):
"""Copy the current unit with the physical unit decomposed.
For details, see `~astropy.units.UnitBase.decompose`.
"""
return self._copy(self.physical_unit.decompose(bases))
@property
def si(self):
"""Copy the current function unit with the physical unit in SI."""
return self._copy(self.physical_unit.si)
@property
def cgs(self):
"""Copy the current function unit with the physical unit in CGS."""
return self._copy(self.physical_unit.cgs)
def _get_physical_type_id(self):
"""Get physical type corresponding to physical unit."""
return self.physical_unit._get_physical_type_id()
@property
def physical_type(self):
"""Return the physical type of the physical unit (e.g., 'length')."""
return self.physical_unit.physical_type
def is_equivalent(self, other, equivalencies=[]):
"""
Returns `True` if this unit is equivalent to ``other``.
Parameters
----------
other : unit object or string or tuple
The unit to convert to. If a tuple of units is specified, this
method returns true if the unit matches any of those in the tuple.
equivalencies : list of equivalence pairs, optional
A list of equivalence pairs to try if the units are not
directly convertible. See :ref:`unit_equivalencies`.
This list is in addition to the built-in equivalencies between the
function unit and the physical one, as well as possible global
defaults set by, e.g., `~astropy.units.set_enabled_equivalencies`.
Use `None` to turn off any global equivalencies.
Returns
-------
bool
"""
if isinstance(other, tuple):
return any(self.is_equivalent(u, equivalencies=equivalencies)
for u in other)
other_physical_unit = getattr(other, 'physical_unit', (
dimensionless_unscaled if self.function_unit.is_equivalent(other)
else other))
return self.physical_unit.is_equivalent(other_physical_unit,
equivalencies)
def to(self, other, value=1., equivalencies=[]):
"""
Return the converted values in the specified unit.
Parameters
----------
other : `~astropy.units.Unit` object, `~astropy.units.function.FunctionUnitBase` object or string
The unit to convert to.
value : scalar int or float, or sequence convertible to array, optional
Value(s) in the current unit to be converted to the specified unit.
If not provided, defaults to 1.0.
equivalencies : list of equivalence pairs, optional
A list of equivalence pairs to try if the units are not
directly convertible. See :ref:`unit_equivalencies`.
This list is in meant to treat only equivalencies between different
physical units; the build-in equivalency between the function
unit and the physical one is automatically taken into account.
Returns
-------
values : scalar or array
Converted value(s). Input value sequences are returned as
numpy arrays.
Raises
------
UnitsError
If units are inconsistent.
"""
# conversion to one's own physical unit should be fastest
if other is self.physical_unit:
return self.to_physical(value)
other_function_unit = getattr(other, 'function_unit', other)
if self.function_unit.is_equivalent(other_function_unit):
# when other is an equivalent function unit:
# first convert physical units to other's physical units
other_physical_unit = getattr(other, 'physical_unit',
dimensionless_unscaled)
if self.physical_unit != other_physical_unit:
value_other_physical = self.physical_unit.to(
other_physical_unit, self.to_physical(value),
equivalencies)
# make function unit again, in own system
value = self.from_physical(value_other_physical)
# convert possible difference in function unit (e.g., dex->dB)
return self.function_unit.to(other_function_unit, value)
else:
# when other is not a function unit
return self.physical_unit.to(other, self.to_physical(value),
equivalencies)
def is_unity(self):
return False
def __eq__(self, other):
return (self.physical_unit == getattr(other, 'physical_unit',
dimensionless_unscaled) and
self.function_unit == getattr(other, 'function_unit', other))
def __ne__(self, other):
return not self.__eq__(other)
def __mul__(self, other):
if isinstance(other, (six.string_types, UnitBase, FunctionUnitBase)):
if self.physical_unit == dimensionless_unscaled:
# If dimensionless, drop back to normal unit and retry.
return self.function_unit * other
else:
raise UnitsError("Cannot multiply a function unit "
"with a physical dimension with any unit.")
else:
# Anything not like a unit, try initialising as a function quantity.
try:
return self._quantity_class(other, unit=self)
except Exception:
return NotImplemented
def __rmul__(self, other):
return self.__mul__(other)
def __div__(self, other):
if isinstance(other, (six.string_types, UnitBase, FunctionUnitBase)):
if self.physical_unit == dimensionless_unscaled:
# If dimensionless, drop back to normal unit and retry.
return self.function_unit / other
else:
raise UnitsError("Cannot divide a function unit "
"with a physical dimension by any unit.")
else:
# Anything not like a unit, try initialising as a function quantity.
try:
return self._quantity_class(1./other, unit=self)
except Exception:
return NotImplemented
def __rdiv__(self, other):
if isinstance(other, (six.string_types, UnitBase, FunctionUnitBase)):
if self.physical_unit == dimensionless_unscaled:
# If dimensionless, drop back to normal unit and retry.
return other / self.function_unit
else:
raise UnitsError("Cannot divide a function unit "
"with a physical dimension into any unit")
else:
# Don't know what to do with anything not like a unit.
return NotImplemented
__truediv__ = __div__
__rtruediv__ = __rdiv__
def __pow__(self, power):
if power == 0:
return dimensionless_unscaled
elif power == 1:
return self._copy()
if self.physical_unit == dimensionless_unscaled:
return self.function_unit ** power
raise UnitsError("Cannot raise a function unit "
"with a physical dimension to any power but 0 or 1.")
def __pos__(self):
return self._copy()
def to_string(self, format='generic'):
"""
Output the unit in the given format as a string.
The physical unit is appended, within parentheses, to the function
unit, as in "dB(mW)", with both units set using the given format
Parameters
----------
format : `astropy.units.format.Base` instance or str
The name of a format or a formatter object. If not
provided, defaults to the generic format.
"""
if format not in ('generic', 'unscaled', 'latex'):
raise ValueError("Function units cannot be written in {0} format. "
"Only 'generic', 'unscaled' and 'latex' are "
"supported.".format(format))
self_str = self.function_unit.to_string(format)
pu_str = self.physical_unit.to_string(format)
if pu_str == '':
pu_str = '1'
if format == 'latex':
self_str += r'$\mathrm{{\left( {0} \right)}}$'.format(
pu_str[1:-1]) # need to strip leading and trailing "$"
else:
self_str += '({0})'.format(pu_str)
return self_str
def __str__(self):
"""Return string representation for unit."""
self_str = str(self.function_unit)
pu_str = str(self.physical_unit)
if pu_str:
self_str += '({0})'.format(pu_str)
return self_str
def __repr__(self):
# By default, try to give a representation using `Unit(<string>)`,
# with string such that parsing it would give the correct FunctionUnit.
if callable(self.function_unit):
return 'Unit("{0}")'.format(self.to_string())
else:
return '{0}("{1}"{2})'.format(
self.__class__.__name__, self.physical_unit,
"" if self.function_unit is self._default_function_unit
else ', unit="{0}"'.format(self.function_unit))
def _repr_latex_(self):
"""
Generate latex representation of unit name. This is used by
the IPython notebook to print a unit with a nice layout.
Returns
-------
Latex string
"""
return self.to_string('latex')
def __hash__(self):
return hash((self.function_unit, self.physical_unit))
class FunctionQuantity(Quantity):
"""A representation of a (scaled) function of a number with a unit.
Function quantities are quantities whose units are functions containing a
physical unit, such as dB(mW). Most of the arithmetic operations on
function quantities are defined in this base class.
While instantiation is also defined here, this class should not be
instantiated directly. Rather, subclasses should be made which have
``_unit_class`` pointing back to the corresponding function unit class.
Parameters
----------
value : number, sequence of convertible items, `~astropy.units.Quantity`, or `~astropy.units.function.FunctionQuantity`
The numerical value of the function quantity. If a number or
a `~astropy.units.Quantity` with a function unit, it will be converted
to ``unit`` and the physical unit will be inferred from ``unit``.
If a `~astropy.units.Quantity` with just a physical unit, it will
converted to the function unit, after, if necessary, converting it to
the physical unit inferred from ``unit``.
unit : string, `~astropy.units.UnitBase` or `~astropy.units.function.FunctionUnitBase` instance, optional
For an `~astropy.units.function.FunctionUnitBase` instance, the
physical unit will be taken from it; for other input, it will be
inferred from ``value``. By default, ``unit`` is set by the subclass.
dtype : `~numpy.dtype`, optional
The dtype of the resulting Numpy array or scalar that will
hold the value. If not provided, it is determined from the input,
except that any input that cannot represent float (integer and bool)
is converted to float.
copy : bool, optional
If `True` (default), then the value is copied. Otherwise, a copy will
only be made if ``__array__`` returns a copy, if value is a nested
sequence, or if a copy is needed to satisfy an explicitly given
``dtype``. (The `False` option is intended mostly for internal use,
to speed up initialization where a copy is known to have been made.
Use with care.)
order : {'C', 'F', 'A'}, optional
Specify the order of the array. As in `~numpy.array`. Ignored
if the input does not need to be converted and ``copy=False``.
subok : bool, optional
If `False` (default), the returned array will be forced to be of the
class used. Otherwise, subclasses will be passed through.
ndmin : int, optional
Specifies the minimum number of dimensions that the resulting array
should have. Ones will be pre-pended to the shape as needed to meet
this requirement. This parameter is ignored if the input is a
`~astropy.units.Quantity` and ``copy=False``.
Raises
------
TypeError
If the value provided is not a Python numeric type.
TypeError
If the unit provided is not a `~astropy.units.function.FunctionUnitBase`
or `~astropy.units.Unit` object, or a parseable string unit.
"""
_unit_class = None
"""Default `~astropy.units.function.FunctionUnitBase` subclass.
This should be overridden by subclasses.
"""
# Ensure priority over ndarray, regular Unit & Quantity, and FunctionUnit.
__array_priority__ = 40000
# Define functions that work on FunctionQuantity.
_supported_ufuncs = SUPPORTED_UFUNCS
_supported_functions = SUPPORTED_FUNCTIONS
def __new__(cls, value, unit=None, dtype=None, copy=True, order=None,
subok=False, ndmin=0):
if unit is not None:
# Convert possible string input to a (function) unit.
unit = Unit(unit)
if not isinstance(unit, FunctionUnitBase):
# By default, use value's physical unit.
value_unit = getattr(value, 'unit', None)
if value_unit is None:
# if iterable, see if first item has a unit
# (mixed lists fail in super call below).
try:
value_unit = getattr(value[0], 'unit')
except Exception:
pass
physical_unit = getattr(value_unit, 'physical_unit', value_unit)
unit = cls._unit_class(physical_unit, function_unit=unit)
# initialise!
return super(FunctionQuantity,
cls).__new__(cls, value, unit, dtype=dtype, copy=copy,
order=order, subok=subok, ndmin=ndmin)
# ↓↓↓ properties not found in Quantity
@property
def physical(self):
"""The physical quantity corresponding the function one."""
return self.to(self.unit.physical_unit)
@property
def _function_view(self):
"""View as Quantity with function unit, dropping the physical unit.
Use `~astropy.units.quantity.Quantity.value` for just the value.
"""
return self._new_view(unit=self.unit.function_unit)
# ↓↓↓ methods overridden to change the behaviour
@property
def si(self):
"""Return a copy with the physical unit in SI units."""
return self.__class__(self.physical.si)
@property
def cgs(self):
"""Return a copy with the physical unit in CGS units."""
return self.__class__(self.physical.cgs)
def decompose(self, bases=[]):
"""Generate a new `FunctionQuantity` with the physical unit decomposed.
For details, see `~astropy.units.Quantity.decompose`.
"""
return self.__class__(self.physical.decompose(bases))
# ↓↓↓ methods overridden to add additional behaviour
def __array_prepare__(self, obj, context=None):
"""Check that the ufunc can deal with a FunctionQuantity."""
# If no context is set, just return the input
if context is None: # pragma: no cover
return obj
# Find out whether ufunc is supported
function = context[0]
if not (function in self._supported_ufuncs or
all(arg.unit.physical_unit == dimensionless_unscaled
for arg in context[1][:function.nin]
if (hasattr(arg, 'unit') and
hasattr(arg.unit, 'physical_unit')))):
raise UnitTypeError("Cannot use function '{0}' with function "
"quantities that are not dimensionless."
.format(context[0].__name__))
return super(FunctionQuantity, self).__array_prepare__(obj, context)
def __quantity_subclass__(self, unit):
if isinstance(unit, FunctionUnitBase):
return self.__class__, True
else:
return super(FunctionQuantity,
self).__quantity_subclass__(unit)[0], False
def _set_unit(self, unit):
if not isinstance(unit, self._unit_class):
# Have to take care of, e.g., (10*u.mag).view(u.Magnitude)
try:
# "or 'nonsense'" ensures `None` breaks, just in case.
unit = self._unit_class(function_unit=unit or 'nonsense')
except Exception:
raise UnitTypeError(
"{0} instances require {1} function units"
.format(type(self).__name__, self._unit_class.__name__) +
", so cannot set it to '{0}'.".format(unit))
self._unit = unit
# ↓↓↓ methods overridden to change behaviour
def __mul__(self, other):
if self.unit.physical_unit == dimensionless_unscaled:
return self._function_view * other
raise UnitTypeError("Cannot multiply function quantities which "
"are not dimensionless with anything.")
def __truediv__(self, other):
if self.unit.physical_unit == dimensionless_unscaled:
return self._function_view / other
raise UnitTypeError("Cannot divide function quantities which "
"are not dimensionless by anything.")
def __rtruediv__(self, other):
if self.unit.physical_unit == dimensionless_unscaled:
return self._function_view.__rdiv__(other)
raise UnitTypeError("Cannot divide function quantities which "
"are not dimensionless into anything.")
def _comparison(self, other, comparison_func):
"""Do a comparison between self and other, raising UnitsError when
other cannot be converted to self because it has different physical
unit, and returning NotImplemented when there are other errors."""
try:
# will raise a UnitsError if physical units not equivalent
other_in_own_unit = self._to_own_unit(other, check_precision=False)
except UnitsError as exc:
if self.unit.physical_unit != dimensionless_unscaled:
raise exc
try:
other_in_own_unit = self._function_view._to_own_unit(
other, check_precision=False)
except Exception:
raise exc
except Exception:
return NotImplemented
return comparison_func(other_in_own_unit)
def __eq__(self, other):
try:
return self._comparison(other, self.value.__eq__)
except UnitsError:
return False
def __ne__(self, other):
try:
return self._comparison(other, self.value.__ne__)
except UnitsError:
return True
def __gt__(self, other):
return self._comparison(other, self.value.__gt__)
def __ge__(self, other):
return self._comparison(other, self.value.__ge__)
def __lt__(self, other):
return self._comparison(other, self.value.__lt__)
def __le__(self, other):
return self._comparison(other, self.value.__le__)
# Ensure Quantity methods are used only if they make sense.
def _wrap_function(self, function, *args, **kwargs):
if function in self._supported_functions:
return super(FunctionQuantity,
self)._wrap_function(function, *args, **kwargs)
# For dimensionless, we can convert to regular quantities.
if all(arg.unit.physical_unit == dimensionless_unscaled
for arg in (self,) + args
if (hasattr(arg, 'unit') and
hasattr(arg.unit, 'physical_unit'))):
args = tuple(getattr(arg, '_function_view', arg) for arg in args)
return self._function_view._wrap_function(function, *args, **kwargs)
raise TypeError("Cannot use method that uses function '{0}' with "
"function quantities that are not dimensionless."
.format(function.__name__))
|