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From: Alexandre Detiste <tchet@debian.org>
Forwarded: no
--- a/BCBio/GFF/GFFOutput.py
+++ b/BCBio/GFF/GFFOutput.py
@@ -3,7 +3,7 @@
The target format is GFF3, the current GFF standard:
http://www.sequenceontology.org/gff3.shtml
"""
-from six.moves import urllib
+import urllib.parse
from Bio import SeqIO
--- a/BCBio/GFF/GFFParser.py
+++ b/BCBio/GFF/GFFParser.py
@@ -21,8 +21,7 @@
import collections
import io
import itertools
-import six
-from six.moves import urllib
+import urllib.parse
# Make defaultdict compatible with versions of python older than 2.4
try:
collections.defaultdict
@@ -816,7 +815,7 @@
if hasattr(in_file, "read"):
need_close = False
in_handle = in_file
- if six.PY3 and not isinstance(in_handle, io.TextIOBase):
+ if not isinstance(in_handle, io.TextIOBase):
raise TypeError('input handle must be opened in text mode')
else:
need_close = True
--- a/setup.py
+++ b/setup.py
@@ -18,5 +18,5 @@
description="Read and write Generic Feature Format (GFF) with Biopython integration.",
url="https://github.com/chapmanb/bcbb/tree/master/gff",
packages=find_packages(),
- install_requires=["six", "biopython"]
+ install_requires=["biopython"]
)
|
