File: examples.py

package info (click to toggle)
python-bel-resources 0.0.3-4
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, forky, sid, trixie
  • size: 208 kB
  • sloc: python: 896; sh: 20; makefile: 3
file content (58 lines) | stat: -rw-r--r-- 1,885 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
# -*- coding: utf-8 -*-

"""Example BEL scripts."""

__all__ = [
    'simple',
]

simple = """##################################################################################
# Document Properties Section

SET DOCUMENT Name = "PyBEL Test Simple"
SET DOCUMENT Description = "Made for testing PyBEL parsing"
SET DOCUMENT Version = "1.6.0"
SET DOCUMENT Copyright = "Copyright (c) Charles Tapley Hoyt. All Rights Reserved."
SET DOCUMENT Authors = "Charles Tapley Hoyt"
SET DOCUMENT Licenses = "WTF License"
SET DOCUMENT ContactInfo = "cthoyt@gmail.com"
SET DOCUMENT Project = "PyBEL Testing"

##################################################################################
# Definitions Section

DEFINE NAMESPACE CHEBI AS URL \
"https://owncloud.scai.fraunhofer.de/index.php/s/JsfpQvkdx3Y5EMx/download?path=chebi.belns"
DEFINE NAMESPACE HGNC AS URL \
"https://owncloud.scai.fraunhofer.de/index.php/s/JsfpQvkdx3Y5EMx/download?path=hgnc-human-genes.belns"
DEFINE ANNOTATION Species AS \
URL "https://owncloud.scai.fraunhofer.de/index.php/s/JsfpQvkdx3Y5EMx/download?path=species-taxonomy-id.belanno"
DEFINE ANNOTATION CellLine AS \
URL "https://owncloud.scai.fraunhofer.de/index.php/s/JsfpQvkdx3Y5EMx/download?path=cell-line.belanno"

##################################################################################
# Statements Section

SET STATEMENT_GROUP = "Group 1"

SET Citation = {"PubMed","That one article from last week","123455","2012-01-31","Example Author|Example Author2"}
SET Species = "9606"

SET Evidence = "Evidence 1 \
w extra notes"

p(HGNC:AKT1) -> p(HGNC:EGFR)

SET Evidence = "Evidence 2"
SET CellLine = "10B9 cell"

p(HGNC:EGFR) -| p(HGNC:FADD)
p(HGNC:EGFR) =| p(HGNC:CASP8)

SET Citation = {"PubMed","That other article from last week","123456"}
SET Species = "10116"
SET Evidence = "Evidence 3"

p(HGNC:FADD) -> p(HGNC:CASP8)
p(HGNC:AKT1) -- p(HGNC:CASP8)
"""