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sudo: false
language: python
python:
- "2.7"
env:
- TOX_ENV=py34 GALAXY_VERSION=dev
- TOX_ENV=py33 GALAXY_VERSION=dev
- TOX_ENV=py27 GALAXY_VERSION=dev
- TOX_ENV=py27 GALAXY_VERSION=release_15.07
- TOX_ENV=py27 GALAXY_VERSION=release_15.05
- TOX_ENV=py27 GALAXY_VERSION=release_15.03
- TOX_ENV=py27 GALAXY_VERSION=release_15.01
- TOX_ENV=py27 GALAXY_VERSION=release_14.10
- TOX_ENV=py27 GALAXY_VERSION=release_14.08
- TOX_ENV=py27 GALAXY_VERSION=release_14.06
- TOX_ENV=py27 GALAXY_VERSION=release_14.04
- TOX_ENV=py27 GALAXY_VERSION=release_14.02
- TOX_ENV=py26 GALAXY_VERSION=dev
install:
- python setup.py install
- cp run_galaxy.sh $HOME
- pip install "tox>=1.8.0"
before_script:
# Install Galaxy
- cd $HOME
- wget https://github.com/galaxyproject/galaxy/archive/${GALAXY_VERSION}.tar.gz
- tar xvzf ${GALAXY_VERSION}.tar.gz | tail
# Releases/dev branch are named differently
- cd galaxy-${GALAXY_VERSION}/
# Create a PostgreSQL database for Galaxy. The default SQLite3 database makes test fail randomly because of "database locked" error.
- createdb -U postgres galaxy-travis
- if [ -f universe_wsgi.ini.sample ]; then GALAXY_CONFIG_FILE=universe_wsgi.ini; else GALAXY_CONFIG_FILE=config/galaxy.ini; fi
- if [ -f universe_wsgi.ini.sample ]; then GALAXY_CONFIG_DIR=.; else GALAXY_CONFIG_DIR=config; fi
# Change Galaxy configuration to use the newly created PostgreSQL database
- sed -e 's|^#database_connection.*|database_connection = postgresql://postgres:@localhost/galaxy-travis|' $GALAXY_CONFIG_FILE.sample > $GALAXY_CONFIG_FILE
# Setup Galaxy master API key and admin user
- GALAXY_MASTER_API_KEY=`date --rfc-3339=ns | md5sum | cut -f 1 -d ' '`
- GALAXY_USER_EMAIL=${USER}@localhost.localdomain
- sed -i -e "s/^#master_api_key.*/master_api_key = $GALAXY_MASTER_API_KEY/" -e "s/^#admin_users.*/admin_users = $GALAXY_USER_EMAIL/" $GALAXY_CONFIG_FILE
# Change configuration needed by many tests
- sed -i -e 's/^#allow_user_dataset_purge.*/allow_user_dataset_purge = True/' $GALAXY_CONFIG_FILE
# Change Galaxy configuration needed by some library tests
- sed -i -e 's/^#allow_library_path_paste.*/allow_library_path_paste = True/' $GALAXY_CONFIG_FILE
- sed -i -e 's/^#enable_beta_workflow_modules.*/enable_beta_workflow_modules = True/' $GALAXY_CONFIG_FILE
- if [ -f test/functional/tools/samples_tool_conf.xml ]; then sed -i -e "s/^#tool_config_file.*/tool_config_file = $GALAXY_CONFIG_DIR\/tool_conf.xml.sample,$GALAXY_CONFIG_DIR\/shed_tool_conf.xml.sample,test\/functional\/tools\/samples_tool_conf.xml/" $GALAXY_CONFIG_FILE; fi
# Start Galaxy and wait for successful server start
- GALAXY_RUN_ALL=1 ../run_galaxy.sh --daemon --wait
# Use the master API key to create the admin user and get its API key
- export BIOBLEND_GALAXY_URL=http://localhost:8080
- GALAXY_USER=$USER
- GALAXY_USER_PASSWD=`date --rfc-3339=ns | md5sum | cut -f 1 -d ' '`
- export BIOBLEND_GALAXY_API_KEY=`python $TRAVIS_BUILD_DIR/docs/examples/create_user_get_api_key.py $BIOBLEND_GALAXY_URL $GALAXY_MASTER_API_KEY $GALAXY_USER $GALAXY_USER_EMAIL $GALAXY_USER_PASSWD`
- echo "Created new Galaxy user $GALAXY_USER with email $GALAXY_USER_EMAIL , password $GALAXY_USER_PASSWD and API key $BIOBLEND_GALAXY_API_KEY"
script:
# Run nosetests through setuptools, so it will install test depedencies
- cd $TRAVIS_BUILD_DIR && tox -e $TOX_ENV
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