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"""
This example retrieves details of all the Data Libraries available to us and lists information on them.
Usage: python3 list_data_libraries.py <galaxy-url> <galaxy-API-key>
"""
import sys
from bioblend.galaxy import GalaxyInstance
if len(sys.argv) != 3:
print("Usage: python3 list_data_libraries.py <galaxy-url> <galaxy-API-key>")
sys.exit(1)
galaxy_url = sys.argv[1]
galaxy_key = sys.argv[2]
print("Initiating Galaxy connection")
gi = GalaxyInstance(url=galaxy_url, key=galaxy_key)
print("Retrieving Data Library list")
libraries = gi.libraries.get_libraries()
if len(libraries) == 0:
print("There are no Data Libraries available.")
else:
print("\nData Libraries:")
for lib_dict in libraries:
print(f"{lib_dict['name']} : {lib_dict['id']}")
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