1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32
|
"""
This example retrieves details of all the Histories in our Galaxy account and lists information on them.
Usage: python list_histories.py <galaxy-url> <galaxy-API-key>
"""
import sys
from bioblend.galaxy import GalaxyInstance
if len(sys.argv) != 3:
print("Usage: python list_histories.py <galaxy-url> <galaxy-API-key>")
sys.exit(1)
galaxy_url = sys.argv[1]
galaxy_key = sys.argv[2]
print("Initiating Galaxy connection")
gi = GalaxyInstance(url=galaxy_url, key=galaxy_key)
print("Retrieving History list")
histories = gi.histories.get_histories()
if len(histories) == 0:
print("There are no Histories in your account.")
else:
print("\nHistories:")
for hist_dict in histories:
# As an example, we retrieve a piece of metadata (the size) using show_history
hist_details = gi.histories.show_history(hist_dict["id"])
print(f"{hist_dict['name']} ({hist_details['size']}) : {hist_dict['id']}")
|