File: list_workflows.py

package info (click to toggle)
python-bioblend 1.2.0-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 1,096 kB
  • sloc: python: 7,596; sh: 219; makefile: 158
file content (30 lines) | stat: -rw-r--r-- 739 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
"""
This example retrieves details of all the Workflows in our Galaxy account and lists information on them.

Usage: python list_workflows.py <Galaxy_URL> <Galaxy_API_key>
"""

import sys

from bioblend.galaxy.objects import GalaxyInstance

if len(sys.argv) != 3:
    print("Usage: python list_workflows.py <Galaxy_URL> <Galaxy_API_key>")
    sys.exit(1)
galaxy_url = sys.argv[1]
galaxy_key = sys.argv[2]

print("Initiating Galaxy connection")

gi = GalaxyInstance(galaxy_url, galaxy_key)

print("Retrieving Workflows list")

workflows = gi.workflows.get_previews()

if len(workflows) == 0:
    print("There are no Workflows in your account.")
else:
    print("\nWorkflows:")
    for wf in workflows:
        print(f"{wf.name} : {wf.id}")